TCONS_00042402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042402
Unique NameTCONS_00042402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042402 ID=TCONS_00042402|Name=TCONS_00042402|organism=Clytia hemisphaerica|type=transcript|length=481bp
NNCTTCTGGTTCCCATGTATTCTCCTCTTCGGGAAAATCCTGCCATTTGA
TTAAGAAGTATCTCTTGcttcttttcatcttcattttcagtaTTCTCTCG
ACCATATACATCTTTTCGTCCTCTTGTTCTCCTTTCTCGTCATCGTTTGG
ATCGAGAGATTGGCTAATTCTCCCGTTTGCACCATCTTGGTCCGGATTTT
GACTACTGTTTCCTTGTTCGTGTTCTTCGGTTCCACCGTTTTGGTTCTCT
TGATTGGAACTGTTTTCACTTGAGTCGTCTTTCTCCTCTTCTGGTTCCCC
TCCTATGTCTTCTGAGCCTTCAATATCCTCGGATTCGTCACTGCTTTTAT
CTTCATCTTGCATCACTCGGAAGTTAGGATCTTTGAACGATTTCAATCTA
TTCACGTGAACTGCTGTTGGCTTTCTTTTGTTGAGCGGATCAGATAATTC
GTAGTTTACCTCCGACAACTTCTTTGTGANN
Run BLAST on NCBI

protein sequence of TCONS_00042402-protein

>TCONS_00042402-protein ID=TCONS_00042402-protein|Name=TCONS_00042402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
XTKKLSEVNYELSDPLNKRKPTAVHVNRLKSFKDPNFRVMQDEDKSSDES
EDIEGSEDIGGEPEEEKDDSSENSSNQENQNGGTEEHEQGNSSQNPDQDG
ANGRISQSLDPNDDEKGEQEDEKMYMVERILKMKMKRSKRYFLIKWQDFP
EEENTWEPEX
Run BLAST on NCBI

transcript from alignment at sc0003397:12302..12782

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042402 ID=TCONS_00042402|Name=TCONS_00042402|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0003397:12302..12782 (Clytia hemisphaerica)
NNTCACAAAGAAGTTGTCGGAGGTAAACTACGAATTATCTGATCCGCTCA
ACAAAAGAAAGCCAACAGCAGTTCACGTGAATAGATTGAAATCGTTCAAA
GATCCTAACTTCCGAGTGATGCAAGATGAAGATAAAAGCAGTGACGAATC
CGAGGATATTGAAGGCTCAGAAGACATAGGAGGGGAACCAGAAGAGGAGA
AAGACGACTCAAGTGAAAACAGTTCCAATCAAGAGAACCAAAACGGTGGA
ACCGAAGAACACGAACAAGGAAACAGTAGTCAAAATCCGGACCAAGATGG
TGCAAACGGGAGAATTAGCCAATCTCTCGATCCAAACGATGACGAGAAAG
GAGAACAAGAGGACGAAAAGATGTATATGGTCGAGAGAAtactgaaaatg
aagatgaaaagaagCAAGAGATACTTCTTAATCAAATGGCAGGATTTTCC
CGAAGAGGAGAATACATGGGAACCAGAAGNN

Coding sequence (CDS) from alignment at sc0003397:12302..12782

>TCONS_00042402 ID=TCONS_00042402|Name=TCONS_00042402|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0003397:12302..12782 (Clytia hemisphaerica)
NTCACAAAGAAGTTGTCGGAGGTAAACTACGAATTATCTGATCCGCTCAA
CAAAAGAAAGCCAACAGCAGTTCACGTGAATAGATTGAAATCGTTCAAAG
ATCCTAACTTCCGAGTGATGCAAGATGAAGATAAAAGCAGTGACGAATCC
GAGGATATTGAAGGCTCAGAAGACATAGGAGGGGAACCAGAAGAGGAGAA
AGACGACTCAAGTGAAAACAGTTCCAATCAAGAGAACCAAAACGGTGGAA
CCGAAGAACACGAACAAGGAAACAGTAGTCAAAATCCGGACCAAGATGGT
GCAAACGGGAGAATTAGCCAATCTCTCGATCCAAACGATGACGAGAAAGG
AGAACAAGAGGACGAAAAGATGTATATGGTCGAGAGAAtactgaaaatga
agatgaaaagaagCAAGAGATACTTCTTAATCAAATGGCAGGATTTTCCC
GAAGAGGAGAATACATGGGAACCAGAAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026246XLOC_026246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042402-exon-sc0003397-1491911889:12302..12782TCONS_00042402-exon-sc0003397-1491911889:12302..12782Clytia hemisphaericaexon
TCONS_00042402-exon-sc0003397-1510915933:12302..12782TCONS_00042402-exon-sc0003397-1510915933:12302..12782Clytia hemisphaericaexon
TCONS_00042402-exon-sc0003397-1575043694:12302..12782TCONS_00042402-exon-sc0003397-1575043694:12302..12782Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042402-proteinTCONS_00042402-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003397supercontigsc0003397:12302..12782 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.479003	0.314151	0.338567	0.404564	0.23567	0.138995	2.69523	3.66241	0.825017	1.44037	1.75257	0.387217	12.0656	15.9246	7.9721	11.5798	3.107	3.79989	11.1169	9.17775	9.47146	3.14862	2.34297	4.71096	22.0122	23.0674	4.76321	2.00976	0.289541	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023780Chromo_domain
IPR000953Chromo/chromo_shadow_dom
IPR016197Chromodomain-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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