TCONS_00042394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042394
Unique NameTCONS_00042394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042394 ID=TCONS_00042394|Name=TCONS_00042394|organism=Clytia hemisphaerica|type=transcript|length=807bp
CTTTGGTATCCTAATACGATTTGCCTGCCTCTTACGAACTGCAGCTTGCC
CAGAACGATCTTTCGGATTTTTCACTACCAGTTTCGGTGCATTCCCTTGA
AGATTTGACGGGACTGCTCTTGGTGGTGGTAATGGTTCACTTGCAAATCG
TCTTGTCACCGGTGCTTCATCTTGCCCTTGTAACAGCAACGTGGTAATAT
CTTGAGGTTCACGGTCTTTGTACCAAAAAGATAAAGATTTCTCATTAATG
ATGGGAAGCTGCATACGTGTGTTGTTGACAAGGTATTGGCTATTCAAGAC
ACATGCCCTGATCTTGGAATAGTCTGACAAAATTGATGTCCATCTTGAGC
GGAATTTCTTGTCATCTGTTTTTTGCTTTGGATCTTGATACGTTTGGCAA
AGATGGATGTAAAGTGCCTCTGTGATCCTGCTTTTGTCAGgagattcaat
tttcatttttgcagCACCAAGGAAAGCGATCTCCATTTTTTGGGTGTCAA
ACTCACCACCATGCTTTTTTGACGAAATGAACCACTTAAACGTTTGTTAG
GGACAGGATCAAATCTGAGTGGTTTCTTGTCATATTCATCAAGCTTACTG
TAAAGATCTGCAATGATCACAGCATCAGCATCGCTCACACTTAAACCTTC
CGACTGTTTCAATAGTGCCAGGGCCAAACGATCAACTTTATCCCATACTG
GAATGCCTTTCCTGTCGGTCGAGGTTGATGGATTCACAGTATCTTCTTCC
TCTTGCACTCTCTCTTTCTGGCCTGGGTGATGGCAAGGAGCGTCAGGATT
GATTTCC
Run BLAST on NCBI

protein sequence of TCONS_00042394-protein

>TCONS_00042394-protein ID=TCONS_00042394-protein|Name=TCONS_00042394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MEIAFLGAAKMKIESPDKSRITEALYIHLCQTYQDPKQKTDDKKFRSRWT
SILSDYSKIRACVLNSQYLVNNTRMQLPIINEKSLSFWYKDREPQDITTL
LLQGQDEAPVTRRFASEPLPPPRAVPSNLQGNAPKLVVKNPKDRSGQAAV
RKRQANRIRIPK
Run BLAST on NCBI

transcript from alignment at sc0003394:1785..2591

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042394 ID=TCONS_00042394|Name=TCONS_00042394|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0003394:1785..2591 (Clytia hemisphaerica)
GGAAATCAATCCTGACGCTCCTTGCCATCACCCAGGCCAGAAAGAGAGAG
TGCAAGAGGAAGAAGATACTGTGAATCCATCAACCTCGACCGACAGGAAA
GGCATTCCAGTATGGGATAAAGTTGATCGTTTGGCCCTGGCACTATTGAA
ACAGTCGGAAGGTTTAAGTGTGAGCGATGCTGATGCTGTGATCATTGCAG
ATCTTTACAGTAAGCTTGATGAATATGACAAGAAACCACTCAGATTTGAT
CCTGTCCCTAACAAACGTTTAAGTGGTTCATTTCGTCAAAAAAGCATGGT
GGTGAGTTTGACACCCAAAAAATGGAGATCGCTTTCCTTGGTGctgcaaa
aatgaaaattgaatctcCTGACAAAAGCAGGATCACAGAGGCACTTTACA
TCCATCTTTGCCAAACGTATCAAGATCCAAAGCAAAAAACAGATGACAAG
AAATTCCGCTCAAGATGGACATCAATTTTGTCAGACTATTCCAAGATCAG
GGCATGTGTCTTGAATAGCCAATACCTTGTCAACAACACACGTATGCAGC
TTCCCATCATTAATGAGAAATCTTTATCTTTTTGGTACAAAGACCGTGAA
CCTCAAGATATTACCACGTTGCTGTTACAAGGGCAAGATGAAGCACCGGT
GACAAGACGATTTGCAAGTGAACCATTACCACCACCAAGAGCAGTCCCGT
CAAATCTTCAAGGGAATGCACCGAAACTGGTAGTGAAAAATCCGAAAGAT
CGTTCTGGGCAAGCTGCAGTTCGTAAGAGGCAGGCAAATCGTATTAGGAT
ACCAAAG

Coding sequence (CDS) from alignment at sc0003394:1785..2591

>TCONS_00042394 ID=TCONS_00042394|Name=TCONS_00042394|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0003394:1785..2591 (Clytia hemisphaerica)
ATGGAGATCGCTTTCCTTGGTGctgcaaaaatgaaaattgaatctcCTGA
CAAAAGCAGGATCACAGAGGCACTTTACATCCATCTTTGCCAAACGTATC
AAGATCCAAAGCAAAAAACAGATGACAAGAAATTCCGCTCAAGATGGACA
TCAATTTTGTCAGACTATTCCAAGATCAGGGCATGTGTCTTGAATAGCCA
ATACCTTGTCAACAACACACGTATGCAGCTTCCCATCATTAATGAGAAAT
CTTTATCTTTTTGGTACAAAGACCGTGAACCTCAAGATATTACCACGTTG
CTGTTACAAGGGCAAGATGAAGCACCGGTGACAAGACGATTTGCAAGTGA
ACCATTACCACCACCAAGAGCAGTCCCGTCAAATCTTCAAGGGAATGCAC
CGAAACTGGTAGTGAAAAATCCGAAAGATCGTTCTGGGCAAGCTGCAGTT
CGTAAGAGGCAGGCAAATCGTATTAGGATACCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026238XLOC_026238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042394-exon-sc0003394-1491911889:1785..2591TCONS_00042394-exon-sc0003394-1491911889:1785..2591Clytia hemisphaericaexon
TCONS_00042394-exon-sc0003394-1510915933:1785..2591TCONS_00042394-exon-sc0003394-1510915933:1785..2591Clytia hemisphaericaexon
TCONS_00042394-exon-sc0003394-1575043694:1785..2591TCONS_00042394-exon-sc0003394-1575043694:1785..2591Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042394-proteinTCONS_00042394-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003394supercontigsc0003394:1785..2591 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0671734	0	0.0800062	0.063222	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.113696	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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