TCONS_00042388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042388
Unique NameTCONS_00042388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042388 ID=TCONS_00042388|Name=TCONS_00042388|organism=Clytia hemisphaerica|type=transcript|length=343bp
CGGCAACCCCGTCGGACGGCAAGGGTGGTACCCCCGCATCCAGATATAAA
ATGAGATGAACATATTTTCCAAAAGAACAACCTGTTTTATGACTAGGTGG
GGACTGGGTGTGCCCCATTCACACACTTacaatttaataaaaagaaaatc
ttacAATATCAAGATAGGTATAACTTAATATCTCCAAAGGATCCACTTAA
CAGAGTTtgatatagatagatagatatgccctccgatgcatcggaatggg
tcctaccattgagtttcaagcccgaagggctagaggtcaatctctttggt
aggatttgaagccaacaaatcctaccaaagttgcgcggccttg
Run BLAST on NCBI

transcript from alignment at sc0003387:2..344

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042388 ID=TCONS_00042388|Name=TCONS_00042388|organism=Clytia hemisphaerica|type=transcript|length=343bp|location=Sequence derived from alignment at sc0003387:2..344 (Clytia hemisphaerica)
caaggccgcgcaactttggtaggatttgttggcttcaaatcctaccaaag
agattgacctctagcccttcgggcttgaaactcaatggtaggacccattc
cgatgcatcggagggcatatctatctatctatatcaAACTCTGTTAAGTG
GATCCTTTGGAGATATTAAGTTATACCTATCTTGATATTgtaagattttc
tttttattaaattgtAAGTGTGTGAATGGGGCACACCCAGTCCCCACCTA
GTCATAAAACAGGTTGTTCTTTTGGAAAATATGTTCATCTCATTTTATAT
CTGGATGCGGGGGTACCACCCTTGCCGTCCGACGGGGTTGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026232XLOC_026232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042388-exon-sc0003387-1491911889:2..344TCONS_00042388-exon-sc0003387-1491911889:2..344Clytia hemisphaericaexon
TCONS_00042388-exon-sc0003387-1510915933:2..344TCONS_00042388-exon-sc0003387-1510915933:2..344Clytia hemisphaericaexon
TCONS_00042388-exon-sc0003387-1575043694:2..344TCONS_00042388-exon-sc0003387-1575043694:2..344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003387supercontigsc0003387:2..344 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.659749	0	1.7465	1.04678	1.77513	1.01667	1.08072	0.918765	1.60505	3.16577	0	2.75988	3.81368	7.66287	3.90548	2.01285	0.633789	1.36069	0.896316	0.0627628	0.821509	0.605014	0.77393	0.824459	2.65823	0.321091	0.440346	0.888834	3.32099	3.97497
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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