TCONS_00042387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042387
Unique NameTCONS_00042387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042387 ID=TCONS_00042387|Name=TCONS_00042387|organism=Clytia hemisphaerica|type=transcript|length=367bp
tttagtGTACTAATACAATAAAAATAACTAAATAGATCAACACAATGCCA
CACTTAAAGATCAGAACCACACAACCTGCTTCAGATTTCGATCAGGAATC
CTTTGATCAAATCACAGATGCAATTGCAGCTGTTAATGACAAACCTAAAA
GTtactTTTTGATCGATTTAAAAGGTGATCAGAAGATGTCTTTTGGTGGC
ACAATGGGGAAGGTTGCCCACGTGACATTTTCGTCGATCGGTAAAATCAA
CGCCGAAATGAACGCCAAGTGTGCAGCCGCCATCTTTAAATCGTTGAATG
CAAAAGGAGTTCCCAGTGATAGGCAAGTTTTAGTCTGGACCATAATAATA
ATGAAGTCTAAGCACag
Run BLAST on NCBI

protein sequence of TCONS_00042387-protein

>TCONS_00042387-protein ID=TCONS_00042387-protein|Name=TCONS_00042387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MPHLKIRTTQPASDFDQESFDQITDAIAAVNDKPKSYFLIDLKGDQKMSF
GGTMGKVAHVTFSSIGKINAEMNAKCAAAIFKSLNAKGVPSDRQVLVWTI
IIMKSKH
Run BLAST on NCBI

transcript from alignment at sc0003387:710..1479+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042387 ID=TCONS_00042387|Name=TCONS_00042387|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0003387:710..1479+ (Clytia hemisphaerica)
tttagtGTACTAATACAATAAAAATAACTAAATAGATCAACACAATGCCA
CACTTAAAGATCAGAACCACACAACCTGCTTCAGATTTCGATCAGGAATC
CTTTGATCAAATCACAGATGCAATTGCAGCTGTTAATGACAAACCTAAAA
GTGTAAGTTCGTTGTTATTTTGAAGCCTTCCAATTCCATTCAACCTCTGG
CTAATAACTTATTTGTCTCACGACATaccacaattgattttgattaaaat
tcctaaaaaaatacattttgtcCAATGCTTTCATTTCGAAAACTTTTATG
ACGCAACATATAATTTCTTACTTTTAAAAGCTTTACTTTTACATGAGTTT
CATAAAggatatttcatatcagggcgGCGGTGCAtttatattgtgctgaa
taaaaacaaattattttcctctttctgaccaatcttgctccacatccgtg
tcaactTTGAAGAAATTGTCATAAACGTTAGGCGTTAGGTGttagatttt
gaagaaaatccCGCTTAACTTACAGTAATcagtgttttttctttttcttt
ttcagtactTTTTGATCGATTTAAAAGGTGATCAGAAGATGTCTTTTGGT
GGCACAATGGGGAAGGTTGCCCACGTGACATTTTCGTCGATCGGTAAAAT
CAACGCCGAAATGAACGCCAAGTGTGCAGCCGCCATCTTTAAATCGTTGA
ATGCAAAAGGAGTTCCCAGTGATAGGCAAGTTTTAGTCTGGACCATAATA
ATAATGAAGTCTAAGCACag

Coding sequence (CDS) from alignment at sc0003387:710..1479+

>TCONS_00042387 ID=TCONS_00042387|Name=TCONS_00042387|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0003387:710..1479+ (Clytia hemisphaerica)
ATGCCACACTTAAAGATCAGAACCACACAACCTGCTTCAGATTTCGATCA
GGAATCCTTTGATCAAATCACAGATGCAATTGCAGCTGTTAATGACAAAC
CTAAAAGTtactTTTTGATCGATTTAAAAGGTGATCAGAAGATGTCTTTT
GGTGGCACAATGGGGAAGGTTGCCCACGTGACATTTTCGTCGATCGGTAA
AATCAACGCCGAAATGAACGCCAAGTGTGCAGCCGCCATCTTTAAATCGT
TGAATGCAAAAGGAGTTCCCAGTGATAGGCAAGTTTTAGTCTGGACCATA
ATAATAATGAAGTCTAAGCACATGCCACACTTAAAGATCAGAACCACACA
ACCTGCTTCAGATTTCGATCAGGAATCCTTTGATCAAATCACAGATGCAA
TTGCAGCTGTTAATGACAAACCTAAAAGTtactTTTTGATCGATTTAAAA
GGTGATCAGAAGATGTCTTTTGGTGGCACAATGGGGAAGGTTGCCCACGT
GACATTTTCGTCGATCGGTAAAATCAACGCCGAAATGAACGCCAAGTGTG
CAGCCGCCATCTTTAAATCGTTGAATGCAAAAGGAGTTCCCAGTGATAGG
CAAGTTTTAGTCTGGACCATAATAATAATGAAGTCTAAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026231XLOC_026231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042387-proteinTCONS_00042387-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042387-exon-sc0003387-1491911889:710..861TCONS_00042387-exon-sc0003387-1491911889:710..861Clytia hemisphaericaexon
TCONS_00042387-exon-sc0003387-1510915933:710..861TCONS_00042387-exon-sc0003387-1510915933:710..861Clytia hemisphaericaexon
TCONS_00042387-exon-sc0003387-1575043694:710..861TCONS_00042387-exon-sc0003387-1575043694:710..861Clytia hemisphaericaexon
TCONS_00042387-exon-sc0003387-1491911889:1265..1479TCONS_00042387-exon-sc0003387-1491911889:1265..1479Clytia hemisphaericaexon
TCONS_00042387-exon-sc0003387-1510915933:1265..1479TCONS_00042387-exon-sc0003387-1510915933:1265..1479Clytia hemisphaericaexon
TCONS_00042387-exon-sc0003387-1575043694:1265..1479TCONS_00042387-exon-sc0003387-1575043694:1265..1479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003387supercontigsc0003387:710..1479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9032	15.5759	15.0322	13.6176	80.0362	61.3022	82.2782	85.1225	50.4232	52.6319	40.1838	41.1388	27.4179	20.9248	11.5208	16.0326	6.95332	4.11226	1.10143	1.8032	3.19955	1.66737	8.01205	3.63976	12.8832	14.3419	3.48165	3.47981	14.0201	8.88906
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001398Macrophage_inhib_fac
IPR014347Tautomerase/MIF_sf
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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