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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042384 ID=TCONS_00042384|Name=TCONS_00042384|organism=Clytia hemisphaerica|type=transcript|length=1169bp
ACTAGAATAACTCAAAAAATAAGAGCAATCGAAAAGTGTATTTCAaacta
tttcaattttattttgttgaaagttgaaaagCCGAAAGAAAAAATGTCAG
ATACCGAAGATGTGCCAGCAATATTGCCTAACAATGAACTAGCCCTGGTG
AAGCAAAGACTTTCATGTTACACAGAATGTATTATTGGAACGCGAAATTT
TGTTCAAGAAATCACTCGCTCGATATTAGGTATTGAAAAAGCTATGGCGA
CTGTATCCAAACATGTCAATCAACTATCCGATTCTGAAGAGAGAgctttt
gaaaatctaaaaagttgTCGAGTGAAAATTATGAGAGTTTTTGCCAGGAG
CCATGGTGTTGTTAAAGATATTGAGTGGCTAGCAGAAAGATTGCTAAAAA
AACTTAGCAAAGTGAATGCTGGGGATAGCCAagagaagaaagaagagaaa
tatGCAAAGGCTATTGATGACTTTgaggaaaatgtcaaaactcGCCTAGA
AGAAGTGCGAAACGTCTGTATGGAGTTTGATGAAATATCAGAGAACGGTT
TTGAGATAAACACTGCTATTGAAAAACTTAAGGACTCCGTTAGAGTCAAA
CAAATACAATTAAAAACGCAAATTGGTTCAGAGATAACAAAGACAAGGAT
CTGTTATATCACTTCAGGAACAGctGCCGTCATTGTTGCTTATTTAGCAT
TTAATGGTTATTTAAAATCAATAGCTTTAAATGTATTAAAGTCCGCAAAT
CTGGCTACTGCAGCAGAAAGTTTAGTTGCAGCTGAAGACATCCAATTGGA
GGAAGCAACAACTAAAGGTACCTTATTTTCACAAGTGGCACAAGGGGTCT
TTGCTGCAATCTCTGCTTCATCTTTGTCCTATGGCATAGGTGAACACTTG
GTCGTCAAAGATATTCAACGACAGCTGAAGGAGGGTAATAAAATTATTGA
ATTGATTGCAGAGCACAttacaaaatttgaagaaaagtatCTCGAAATTA
AAGCATTAATCAAAGTCAAGAAAGAAAACATGGATGAAATCAAATACCAA
ATGCAGCATTGTCAAGCTGATGTGCGAAATGTCAAAGACTGCAATTTTGA
TGATGAGGAAATTGAAGACTTAAAAGAACATTTGAAAAGTCTGATCGCAG
AATGTCAGGCCTACCAAAG Run BLAST on NCBI protein sequence of TCONS_00042384-protein >TCONS_00042384-protein ID=TCONS_00042384-protein|Name=TCONS_00042384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
TRITQKIRAIEKCISNYFNFILLKVEKPKEKMSDTEDVPAILPNNELALV
KQRLSCYTECIIGTRNFVQEITRSILGIEKAMATVSKHVNQLSDSEERAF
ENLKSCRVKIMRVFARSHGVVKDIEWLAERLLKKLSKVNAGDSQEKKEEK
YAKAIDDFEENVKTRLEEVRNVCMEFDEISENGFEINTAIEKLKDSVRVK
QIQLKTQIGSEITKTRICYITSGTAAVIVAYLAFNGYLKSIALNVLKSAN
LATAAESLVAAEDIQLEEATTKGTLFSQVAQGVFAAISASSLSYGIGEHL
VVKDIQRQLKEGNKIIELIAEHITKFEEKYLEIKALIKVKKENMDEIKYQ
MQHCQADVRNVKDCNFDDEEIEDLKEHLKSLIAECQAYQ Run BLAST on NCBI transcript from alignment at sc0003386:8219..9652- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042384 ID=TCONS_00042384|Name=TCONS_00042384|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at sc0003386:8219..9652- (Clytia hemisphaerica)
ACTAGAATAACTCAAAAAATAAGAGCAATCGAAAAGTGTATTTCAAACTA
TTTCAATTTTATTTTGTTGAAAGTTGAAAAGCCGAAAGAAAAAATGTCAG
ATACCGAAGATGTGCCAGCAATATTGCCTAACAATGAACTAGCCCTGGTG
AAGCAAAGACTTTCATGTTACACAGAATGTATTATTGGAACGCGAAATTT
TGTTCAAGAAATCACTCGCTCGATATTAGGTATTGAAAAAGCTATGGCGA
CTGTATCCAAACATGTCAATCAACTATCCGATTCTGAAGAGAGAGCTTTT
GAAAATCTAAAAAGTTGTCGAGTGAAAATTATGAGAGTTTTTGCCAGGAG
CCATGGTGTTGTTAAAGATATTGAGTGGCTAGCAGAAAGATTGCTAAAAA
AACTTAGCAAAGTGAATGCTGGGGATAGCCAAGAGAAGAAAGAAGAGAAA
TATGCAAAGGCTATTGATGACTTTGAGGAAAATGTCAAAACTCGCCTAGA
AGAAGTGCGAAACGTCTGTATGGAGTTTGATGAAATATCAGAGAACGGTT
TTGAGATAAACACTGCTATTGAAAAACTTAAGGACTCCGTTAGAGTCAAA
CAAATACAATTAAAAACGCAAATTGGTTCAGAGATAACAAAGACAAGGAT
CTGTTATATCACTTCAGGAACAGGTAGTTACACTTTAGACCTGAACTTTC
TTCTTTGTCCCTGTTGTTGAACAAAAAATCGACGAGTAGTTGAAAGTAGT
TGATCTTAATTTCGCTTTAAAAAAGATTTAAAGAATTTTATAGCAGTGGA
AAATAAAAACAGTGTAAAGTAAAGCTTACTATATGGCAAGCGTTTTGGTA
GAAAATGTCTTTTTTTAGTGACAATAATACAAAACTGAATAAAAAAGCAA
GCTTCTTCAATATTAACAAAAATTTTTTTTAATTTCAGCTGCCGTCATTG
TTGCTTATTTAGCATTTAATGGTTATTTAAAATCAATAGCTTTAAATGTA
TTAAAGTCCGCAAATCTGGCTACTGCAGCAGAAAGTTTAGTTGCAGCTGA
AGACATCCAATTGGAGGAAGCAACAACTAAAGGTACCTTATTTTCACAAG
TGGCACAAGGGGTCTTTGCTGCAATCTCTGCTTCATCTTTGTCCTATGGC
ATAGGTGAACACTTGGTCGTCAAAGATATTCAACGACAGCTGAAGGAGGG
TAATAAAATTATTGAATTGATTGCAGAGCACATTACAAAATTTGAAGAAA
AGTATCTCGAAATTAAAGCATTAATCAAAGTCAAGAAAGAAAACATGGAT
GAAATCAAATACCAAATGCAGCATTGTCAAGCTGATGTGCGAAATGTCAA
AGACTGCAATTTTGATGATGAGGAAATTGAAGACTTAAAAGAACATTTGA
AAAGTCTGATCGCAGAATGTCAGGCCTACCAAAG Coding sequence (CDS) from alignment at sc0003386:8219..9652- >TCONS_00042384 ID=TCONS_00042384|Name=TCONS_00042384|organism=Clytia hemisphaerica|type=CDS|length=2334bp|location=Sequence derived from alignment at sc0003386:8219..9652- (Clytia hemisphaerica)
CTGCCGTCATTGTTGCTTATTTAGCATTTAATGGTTATTTAAAATCAATA
GCTTTAAATGTATTAAAGTCCGCAAATCTGGCTACTGCAGCAGAAAGTTT
AGTTGCAGCTGAAGACATCCAATTGGAGGAAGCAACAACTAAAGGTACCT
TATTTTCACAAGTGGCACAAGGGGTCTTTGCTGCAATCTCTGCTTCATCT
TTGTCCTATGGCATAGGTGAACACTTGGTCGTCAAAGATATTCAACGACA
GCTGAAGGAGGGTAATAAAATTATTGAATTGATTGCAGAGCACATTACAA
AATTTGAAGAAAAGTATCTCGAAATTAAAGCATTAATCAAAGTCAAGAAA
GAAAACATGGATGAAATCAAATACCAAATGCAGCATTGTCAAGCTGATGT
GCGAAATGTCAAAGACTGCAATTTTGATGATGAGGAAATTGAAGACTTAA
AAGAACATTTGAAAAGTCTGATCGCAGAATGTCAGGCCTACCAAACTAGA
ATAACTCAAAAAATAAGAGCAATCGAAAAGTGTATTTCAAACTATTTCAA
TTTTATTTTGTTGAAAGTTGAAAAGCCGAAAGAAAAAATGTCAGATACCG
AAGATGTGCCAGCAATATTGCCTAACAATGAACTAGCCCTGGTGAAGCAA
AGACTTTCATGTTACACAGAATGTATTATTGGAACGCGAAATTTTGTTCA
AGAAATCACTCGCTCGATATTAGGTATTGAAAAAGCTATGGCGACTGTAT
CCAAACATGTCAATCAACTATCCGATTCTGAAGAGAGAGCTTTTGAAAAT
CTAAAAAGTTGTCGAGTGAAAATTATGAGAGTTTTTGCCAGGAGCCATGG
TGTTGTTAAAGATATTGAGTGGCTAGCAGAAAGATTGCTAAAAAAACTTA
GCAAAGTGAATGCTGGGGATAGCCAAGAGAAGAAAGAAGAGAAATATGCA
AAGGCTATTGATGACTTTGAGGAAAATGTCAAAACTCGCCTAGAAGAAGT
GCGAAACGTCTGTATGGAGTTTGATGAAATATCAGAGAACGGTTTTGAGA
TAAACACTGCTATTGAAAAACTTAAGGACTCCGTTAGAGTCAAACAAATA
CAATTAAAAACGCAAATTGGTTCAGAGATAACAAAGACAAGGATCTGTTA
TATCACTTCAGGAACAGCTGCCGTCATTGTTGCTTATTTAGCATTTAATG
GTTATTTAAAATCAATAGCTTTAAATGTATTAAAGTCCGCAAATCTGGCT
ACTGCAGCAGAAAGTTTAGTTGCAGCTGAAGACATCCAATTGGAGGAAGC
AACAACTAAAGGTACCTTATTTTCACAAGTGGCACAAGGGGTCTTTGCTG
CAATCTCTGCTTCATCTTTGTCCTATGGCATAGGTGAACACTTGGTCGTC
AAAGATATTCAACGACAGCTGAAGGAGGGTAATAAAATTATTGAATTGAT
TGCAGAGCACATTACAAAATTTGAAGAAAAGTATCTCGAAATTAAAGCAT
TAATCAAAGTCAAGAAAGAAAACATGGATGAAATCAAATACCAAATGCAG
CATTGTCAAGCTGATGTGCGAAATGTCAAAGACTGCAATTTTGATGATGA
GGAAATTGAAGACTTAAAAGAACATTTGAAAAGTCTGATCGCAGAATGTC
AGGCCTACCAAACTAGAATAACTCAAAAAATAAGAGCAATCGAAAAGTGT
ATTTCAAACTATTTCAATTTTATTTTGTTGAAAGTTGAAAAGCCGAAAGA
AAAAATGTCAGATACCGAAGATGTGCCAGCAATATTGCCTAACAATGAAC
TAGCCCTGGTGAAGCAAAGACTTTCATGTTACACAGAATGTATTATTGGA
ACGCGAAATTTTGTTCAAGAAATCACTCGCTCGATATTAGGTATTGAAAA
AGCTATGGCGACTGTATCCAAACATGTCAATCAACTATCCGATTCTGAAG
AGAGAGCTTTTGAAAATCTAAAAAGTTGTCGAGTGAAAATTATGAGAGTT
TTTGCCAGGAGCCATGGTGTTGTTAAAGATATTGAGTGGCTAGCAGAAAG
ATTGCTAAAAAAACTTAGCAAAGTGAATGCTGGGGATAGCCAAGAGAAGA
AAGAAGAGAAATATGCAAAGGCTATTGATGACTTTGAGGAAAATGTCAAA
ACTCGCCTAGAAGAAGTGCGAAACGTCTGTATGGAGTTTGATGAAATATC
AGAGAACGGTTTTGAGATAAACACTGCTATTGAAAAACTTAAGGACTCCG
TTAGAGTCAAACAAATACAATTAAAAACGCAAATTGGTTCAGAGATAACA
AAGACAAGGATCTGTTATATCACTTCAGGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042384-exon-sc0003386-1575043694:8980..9652 | TCONS_00042384-exon-sc0003386-1575043694:8980..9652 | Clytia hemisphaerica | exon |
| TCONS_00042384-exon-sc0003386-1575043694:8219..8714 | TCONS_00042384-exon-sc0003386-1575043694:8219..8714 | Clytia hemisphaerica | exon |
| TCONS_00042384-exon-sc0003386-1510915933:8980..9652 | TCONS_00042384-exon-sc0003386-1510915933:8980..9652 | Clytia hemisphaerica | exon |
| TCONS_00042384-exon-sc0003386-1510915933:8219..8714 | TCONS_00042384-exon-sc0003386-1510915933:8219..8714 | Clytia hemisphaerica | exon |
| TCONS_00042384-exon-sc0003386-1491911889:8980..9652 | TCONS_00042384-exon-sc0003386-1491911889:8980..9652 | Clytia hemisphaerica | exon |
| TCONS_00042384-exon-sc0003386-1491911889:8219..8714 | TCONS_00042384-exon-sc0003386-1491911889:8219..8714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003386 | supercontig | sc0003386:8219..9652 - |
Blast
The following BLAST results are available for this feature:
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