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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042362 ID=TCONS_00042362|Name=TCONS_00042362|organism=Clytia hemisphaerica|type=transcript|length=2013bp
CTTCAAGAAAAAGAAGTGTTTTAATTGTCAGAAAACTGGGCATATTTCGA
AATTCTGCCCAGAAATCAAATCTGAGACAGGGGCGATTAGAGATGATGTC
AAGCCTGCTCCGCGTACTATTATCAAGATAAACACTTGTGGAAAGACAGT
TGACTTTTTGTACGATACGGGTTCACAGGTCACCATCATGAAACGACAAG
ACTTCGAGAACTTACCAAATAAACCACCACTCCAAAAAGTCGAACGCTCA
GGTACCGCAGTCGACGGCACACCGTTCAAATTTGATGGTATTGCTTATTT
GAATCTATCGTTCCCATCAAGTGACAGTAATAGACATAGACAATACACAT
TAGAGTATGAACCCATTCTCATTTCATCTAACGTTGAATCGAATATTTAT
GGTGCTCAGACGGAggagaaatttagaaaatgtgAAAGAGACATTGAAAA
CTCTACACTTAGTTACACGACGAAAGAGAATGAAAAAGTTACAGTACAAT
GTTATCGGGAGAAAATTTCGTCAGTCACAGCTTACGTCAAAGTCGCTAAA
GTTGCTTATCTACCACCCAACCATACCATGATGATCAAAGGTCGAATCAA
TTCACCGAAAACAATCACTGGGACAAGCTTTTTATGTGAAAATGAAGAGT
TACCAAATTGCTTGAACGTAAACGAACTAACTTTCGAAAACGTTGAAAGA
AACATCACCATACCGATAACCAACCATTCTGAAGTCCAAcagaaactgaa
aaagggacAAATTGTTGCAGAAATTCGAGAAATAGAAAGTTGTCCAGAAG
AGAGTAAAATCGAAGTAAATGCTACGGATGCGTCGAATAAACTTCCTTTG
GATACCGAATCAACTGAACGAAACGAGATTCAAAAATTAGAAACAATTTT
AGAAACTTATTACGGTGCTATTGAGAATTCACCTTTGTCGAGATCGAAAC
TACCTTTGAAACATTCGATAAACCTTACTGATGACGCGCCAACAGTTTGT
GCACCCAGATCGATCCCTCACGCTCGAAAAGAGGCAGTAAAcgaacaaat
aaaaacattattgGAAAATGGATGTATCGAGAGGTCATACAGTCCATATT
CAGCTCCGATAGTACCGGTTTTGAAACCTGATGGTTCGCTACGATTTTGC
ATTGACTATCGCAAATTGAATACCAAAACCATAAACAACAAATATCCGAT
CGCTCGAAATGAAGACCTTTTAGACGGACTGAAAGGGTGTAAATATTTCT
CTGTTATTGATTTGAAAGCAGCTTATCATCACATCGCTATGGAGGAGACC
GACAAATTGAAAACCGCCTTCGATTCACCGCAGGGAAAATTTCAATGGAT
AGTTATGCCTTTCGGTTTGACTGGCGCAGCCTTTACCCTTTCTGCAAATC
TATCTGAAGTTTTGAAAGATTGTCACGNTCTGGGGATGGTTGCTTTCTTC
AGGAAATTCATTCCAGATTTTTCCCATTATGCTGCAGATTTATTTTCACT
ATTGAAAAAAGGAACTCGTTTTCAATGGACAGAAAAACACGCTACAAGTT
TCAATGAGATCAAAAGACTTTTatctgaaaatgttcttttgcTCCACCCA
GATTATACAAAGCCATTCGTTTTGTTTACAGATGCTTCAAATGTGGCTGT
GGGGTTTACCCTGACACAAGAGAACGAAGGAACCTTTTGTCCAATTTTAT
ACGTAGGTCGTTCTTTATCTATTTGTGAAATGAACTATTGTACTACTGAC
AAAGAACTTTTGGGGCTCTATTATTCAGTTAAAAAGAGCGAATTTTACAT
AACAGATCAAATTGTTATTGTTTATACCGACCATAAACCGCTGACCTATC
TATCCACGTTTCGTGATATTGTAAATAAAAGATACCGCTGGATAGAATAT
ATTGAGAACATAGGAATTATTATTCGTTACATTGAAGGAAAAGACAACGT
CATAGGTGATTATATCAGCAGAAATTTAAAAACAGACATTAAAACTGAAA
AACGTTGGAGACC Run BLAST on NCBI protein sequence of TCONS_00042362-protein >TCONS_00042362-protein ID=TCONS_00042362-protein|Name=TCONS_00042362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=670bp
FKKKKCFNCQKTGHISKFCPEIKSETGAIRDDVKPAPRTIIKINTCGKTV
DFLYDTGSQVTIMKRQDFENLPNKPPLQKVERSGTAVDGTPFKFDGIAYL
NLSFPSSDSNRHRQYTLEYEPILISSNVESNIYGAQTEEKFRKCERDIEN
STLSYTTKENEKVTVQCYREKISSVTAYVKVAKVAYLPPNHTMMIKGRIN
SPKTITGTSFLCENEELPNCLNVNELTFENVERNITIPITNHSEVQQKLK
KGQIVAEIREIESCPEESKIEVNATDASNKLPLDTESTERNEIQKLETIL
ETYYGAIENSPLSRSKLPLKHSINLTDDAPTVCAPRSIPHARKEAVNEQI
KTLLENGCIERSYSPYSAPIVPVLKPDGSLRFCIDYRKLNTKTINNKYPI
ARNEDLLDGLKGCKYFSVIDLKAAYHHIAMEETDKLKTAFDSPQGKFQWI
VMPFGLTGAAFTLSANLSEVLKDCHXLGMVAFFRKFIPDFSHYAADLFSL
LKKGTRFQWTEKHATSFNEIKRLLSENVLLLHPDYTKPFVLFTDASNVAV
GFTLTQENEGTFCPILYVGRSLSICEMNYCTTDKELLGLYYSVKKSEFYI
TDQIVIVYTDHKPLTYLSTFRDIVNKRYRWIEYIENIGIIIRYIEGKDNV
IGDYISRNLKTDIKTEKRWR Run BLAST on NCBI transcript from alignment at sc0003366:4031..6043 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042362 ID=TCONS_00042362|Name=TCONS_00042362|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at sc0003366:4031..6043 (Clytia hemisphaerica)
GGTCTCCAACGTTTTTCAGTTTTAATGTCTGTTTTTAAATTTCTGCTGAT
ATAATCACCTATGACGTTGTCTTTTCCTTCAATGTAACGAATAATAATTC
CTATGTTCTCAATATATTCTATCCAGCGGTATCTTTTATTTACAATATCA
CGAAACGTGGATAGATAGGTCAGCGGTTTATGGTCGGTATAAACAATAAC
AATTTGATCTGTTATGTAAAATTCGCTCTTTTTAACTGAATAATAGAGCC
CCAAAAGTTCTTTGTCAGTAGTACAATAGTTCATTTCACAAATAGATAAA
GAACGACCTACGTATAAAATTGGACAAAAGGTTCCTTCGTTCTCTTGTGT
CAGGGTAAACCCCACAGCCACATTTGAAGCATCTGTAAACAAAACGAATG
GCTTTGTATAATCTGGGTGGAgcaaaagaacattttcagatAAAAGTCTT
TTGATCTCATTGAAACTTGTAGCGTGTTTTTCTGTCCATTGAAAACGAGT
TCCTTTTTTCAATAGTGAAAATAAATCTGCAGCATAATGGGAAAAATCTG
GAATGAATTTCCTGAAGAAAGCAACCATCCCCAGANCGTGACAATCTTTC
AAAACTTCAGATAGATTTGCAGAAAGGGTAAAGGCTGCGCCAGTCAAACC
GAAAGGCATAACTATCCATTGAAATTTTCCCTGCGGTGAATCGAAGGCGG
TTTTCAATTTGTCGGTCTCCTCCATAGCGATGTGATGATAAGCTGCTTTC
AAATCAATAACAGAGAAATATTTACACCCTTTCAGTCCGTCTAAAAGGTC
TTCATTTCGAGCGATCGGATATTTGTTGTTTATGGTTTTGGTATTCAATT
TGCGATAGTCAATGCAAAATCGTAGCGAACCATCAGGTTTCAAAACCGGT
ACTATCGGAGCTGAATATGGACTGTATGACCTCTCGATACATCCATTTTC
caataatgtttttatttgttcgTTTACTGCCTCTTTTCGAGCGTGAGGGA
TCGATCTGGGTGCACAAACTGTTGGCGCGTCATCAGTAAGGTTTATCGAA
TGTTTCAAAGGTAGTTTCGATCTCGACAAAGGTGAATTCTCAATAGCACC
GTAATAAGTTTCTAAAATTGTTTCTAATTTTTGAATCTCGTTTCGTTCAG
TTGATTCGGTATCCAAAGGAAGTTTATTCGACGCATCCGTAGCATTTACT
TCGATTTTACTCTCTTCTGGACAACTTTCTATTTCTCGAATTTCTGCAAC
AATTTgtccctttttcagtttctgTTGGACTTCAGAATGGTTGGTTATCG
GTATGGTGATGTTTCTTTCAACGTTTTCGAAAGTTAGTTCGTTTACGTTC
AAGCAATTTGGTAACTCTTCATTTTCACATAAAAAGCTTGTCCCAGTGAT
TGTTTTCGGTGAATTGATTCGACCTTTGATCATCATGGTATGGTTGGGTG
GTAGATAAGCAACTTTAGCGACTTTGACGTAAGCTGTGACTGACGAAATT
TTCTCCCGATAACATTGTACTGTAACTTTTTCATTCTCTTTCGTCGTGTA
ACTAAGTGTAGAGTTTTCAATGTCTCTTTcacattttctaaatttctccT
CCGTCTGAGCACCATAAATATTCGATTCAACGTTAGATGAAATGAGAATG
GGTTCATACTCTAATGTGTATTGTCTATGTCTATTACTGTCACTTGATGG
GAACGATAGATTCAAATAAGCAATACCATCAAATTTGAACGGTGTGCCGT
CGACTGCGGTACCTGAGCGTTCGACTTTTTGGAGTGGTGGTTTATTTGGT
AAGTTCTCGAAGTCTTGTCGTTTCATGATGGTGACCTGTGAACCCGTATC
GTACAAAAAGTCAACTGTCTTTCCACAAGTGTTTATCTTGATAATAGTAC
GCGGAGCAGGCTTGACATCATCTCTAATCGCCCCTGTCTCAGATTTGATT
TCTGGGCAGAATTTCGAAATATGCCCAGTTTTCTGACAATTAAAACACTT
CTTTTTCTTGAAG Coding sequence (CDS) from alignment at sc0003366:4031..6043 >TCONS_00042362 ID=TCONS_00042362|Name=TCONS_00042362|organism=Clytia hemisphaerica|type=CDS|length=2010bp|location=Sequence derived from alignment at sc0003366:4031..6043 (Clytia hemisphaerica)
TCTCCAACGTTTTTCAGTTTTAATGTCTGTTTTTAAATTTCTGCTGATAT
AATCACCTATGACGTTGTCTTTTCCTTCAATGTAACGAATAATAATTCCT
ATGTTCTCAATATATTCTATCCAGCGGTATCTTTTATTTACAATATCACG
AAACGTGGATAGATAGGTCAGCGGTTTATGGTCGGTATAAACAATAACAA
TTTGATCTGTTATGTAAAATTCGCTCTTTTTAACTGAATAATAGAGCCCC
AAAAGTTCTTTGTCAGTAGTACAATAGTTCATTTCACAAATAGATAAAGA
ACGACCTACGTATAAAATTGGACAAAAGGTTCCTTCGTTCTCTTGTGTCA
GGGTAAACCCCACAGCCACATTTGAAGCATCTGTAAACAAAACGAATGGC
TTTGTATAATCTGGGTGGAgcaaaagaacattttcagatAAAAGTCTTTT
GATCTCATTGAAACTTGTAGCGTGTTTTTCTGTCCATTGAAAACGAGTTC
CTTTTTTCAATAGTGAAAATAAATCTGCAGCATAATGGGAAAAATCTGGA
ATGAATTTCCTGAAGAAAGCAACCATCCCCAGANCGTGACAATCTTTCAA
AACTTCAGATAGATTTGCAGAAAGGGTAAAGGCTGCGCCAGTCAAACCGA
AAGGCATAACTATCCATTGAAATTTTCCCTGCGGTGAATCGAAGGCGGTT
TTCAATTTGTCGGTCTCCTCCATAGCGATGTGATGATAAGCTGCTTTCAA
ATCAATAACAGAGAAATATTTACACCCTTTCAGTCCGTCTAAAAGGTCTT
CATTTCGAGCGATCGGATATTTGTTGTTTATGGTTTTGGTATTCAATTTG
CGATAGTCAATGCAAAATCGTAGCGAACCATCAGGTTTCAAAACCGGTAC
TATCGGAGCTGAATATGGACTGTATGACCTCTCGATACATCCATTTTCca
ataatgtttttatttgttcgTTTACTGCCTCTTTTCGAGCGTGAGGGATC
GATCTGGGTGCACAAACTGTTGGCGCGTCATCAGTAAGGTTTATCGAATG
TTTCAAAGGTAGTTTCGATCTCGACAAAGGTGAATTCTCAATAGCACCGT
AATAAGTTTCTAAAATTGTTTCTAATTTTTGAATCTCGTTTCGTTCAGTT
GATTCGGTATCCAAAGGAAGTTTATTCGACGCATCCGTAGCATTTACTTC
GATTTTACTCTCTTCTGGACAACTTTCTATTTCTCGAATTTCTGCAACAA
TTTgtccctttttcagtttctgTTGGACTTCAGAATGGTTGGTTATCGGT
ATGGTGATGTTTCTTTCAACGTTTTCGAAAGTTAGTTCGTTTACGTTCAA
GCAATTTGGTAACTCTTCATTTTCACATAAAAAGCTTGTCCCAGTGATTG
TTTTCGGTGAATTGATTCGACCTTTGATCATCATGGTATGGTTGGGTGGT
AGATAAGCAACTTTAGCGACTTTGACGTAAGCTGTGACTGACGAAATTTT
CTCCCGATAACATTGTACTGTAACTTTTTCATTCTCTTTCGTCGTGTAAC
TAAGTGTAGAGTTTTCAATGTCTCTTTcacattttctaaatttctccTCC
GTCTGAGCACCATAAATATTCGATTCAACGTTAGATGAAATGAGAATGGG
TTCATACTCTAATGTGTATTGTCTATGTCTATTACTGTCACTTGATGGGA
ACGATAGATTCAAATAAGCAATACCATCAAATTTGAACGGTGTGCCGTCG
ACTGCGGTACCTGAGCGTTCGACTTTTTGGAGTGGTGGTTTATTTGGTAA
GTTCTCGAAGTCTTGTCGTTTCATGATGGTGACCTGTGAACCCGTATCGT
ACAAAAAGTCAACTGTCTTTCCACAAGTGTTTATCTTGATAATAGTACGC
GGAGCAGGCTTGACATCATCTCTAATCGCCCCTGTCTCAGATTTGATTTC
TGGGCAGAATTTCGAAATATGCCCAGTTTTCTGACAATTAAAACACTTCT
TTTTCTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042362-exon-sc0003366-1491911889:4031..6043 | TCONS_00042362-exon-sc0003366-1491911889:4031..6043 | Clytia hemisphaerica | exon |
| TCONS_00042362-exon-sc0003366-1510915933:4031..6043 | TCONS_00042362-exon-sc0003366-1510915933:4031..6043 | Clytia hemisphaerica | exon |
| TCONS_00042362-exon-sc0003366-1575043694:4031..6043 | TCONS_00042362-exon-sc0003366-1575043694:4031..6043 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003366 | supercontig | sc0003366:4031..6043 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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