TCONS_00042358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042358
Unique NameTCONS_00042358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042358 ID=TCONS_00042358|Name=TCONS_00042358|organism=Clytia hemisphaerica|type=transcript|length=320bp
GCAGAGTGTTAAAAGGGTGAGAATTTTCTTACACTGTTTGATTCCACGTT
TTAGTATAGCAAGGCAAGTGTAATTATACCNgaaattggtaaCTCCGGGC
CAATATGTCATGGATCAAATCCCTTAACTGcttaagatgaaaaaaaattg
aatttgtcaaTGGTCATGGATAGTGTGAAACAAGTTTCTCCTGGAATCAT
GTATTATATACGATTTTATAAGTTACACAACAATTTTgtcgattttcttt
tgtttaatttcaagtgtttctttgtaatttttgaaaaataacttttttaa
atatttgtttaatattctat
Run BLAST on NCBI

transcript from alignment at sc0003362:9401..9720

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042358 ID=TCONS_00042358|Name=TCONS_00042358|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0003362:9401..9720 (Clytia hemisphaerica)
atagaatattaaacaaatatttaaaaaagttatttttcaaaaattacaaa
gaaacacttgaaattaaacaaaagaaaatcgacAAAATTGTTGTGTAACT
TATAAAATCGTATATAATACATGATTCCAGGAGAAACTTGTTTCACACTA
TCCATGACCAttgacaaattcaattttttttcatcttaagCAGTTAAGGG
ATTTGATCCATGACATATTGGCCCGGAGttaccaatttcNGGTATAATTA
CACTTGCCTTGCTATACTAAAACGTGGAATCAAACAGTGTAAGAAAATTC
TCACCCTTTTAACACTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026203XLOC_026203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042358-exon-sc0003362-1491911889:9401..9720TCONS_00042358-exon-sc0003362-1491911889:9401..9720Clytia hemisphaericaexon
TCONS_00042358-exon-sc0003362-1510915933:9401..9720TCONS_00042358-exon-sc0003362-1510915933:9401..9720Clytia hemisphaericaexon
TCONS_00042358-exon-sc0003362-1575043694:9401..9720TCONS_00042358-exon-sc0003362-1575043694:9401..9720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003362supercontigsc0003362:9401..9720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.5853	5.74359	3.46918	5.40428	0	0	0.47778	0.844887	36.5356	21.1225	27.6895	23.5101	0	0.220728	0.60129	0.389486	0.70726	0.411361	0.464444	0.710987	0.690118	1.00168	1.6503	0	0.367547	0	0.587068	2.63981	2.49189	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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