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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042356 ID=TCONS_00042356|Name=TCONS_00042356|organism=Clytia hemisphaerica|type=transcript|length=890bp
CCCAGAGGTTGCATGCGAGCTCCTTGCATCCTCTTGCTAATAAATTTAAA
CCTATTAAACTTATTAAACCTATTCAACTTTGTTCAAAAAGACAATCTAC
CATTCTTAAAGCTTCAAACTCTTGAAAAGATCCACAATATTTCAAGTATG
CCAGCTTATCAAGTTTCAAAAGCTGTTTTGGGTTCTTTTAATCAAGCCAA
TAGAGAGATATTTGGCCAAACAGCAGGTACACAATGCAGTGCAAACTGTC
TTTACGCTATATTTTGGTCCTATGTAAGACGTACGTCGATTTGGAAAACT
AATGATTTAGATAAGATTTTAATAGAAGGAGACAAATTATATATACAACT
GaatactaatgattatttatcAGTCGATGAAATGCCACGATTCATTGAAT
TCAACGGTGTCGTtactgaaattaattttttaaattctgaaaatggtCAA
GCAAAATTGATTGATAATTATCCCCTTCTGCAAATACCTCTAAGCATGTC
TTCAATCCCAGAATTTGATGCATTGATGATTATTGATGGTTTTACAATAG
CAATTATGAGAAGGCCCCaaggattttttgtttttgattcgCATAGCCGT
AATGAATTTGGATTGCTCGATCCATTTACTGGAAAATCTTGTTTGTTAAA
GTTTGAAACCATATTTGAActagaaaaatatatccaacatttttatttac
aagaaaagaACAAAGATAATGCTTCAACAAAGCTATTCTCGCTTTAAGAG
TAGTGCAATCAagcgaaaaaataattttgatagtGGAAATGATAAAAAGC
GTCAAAAAATGTGCAAGGAGAAAAATAGTACTTACTATGGAACTaacaaa
gaaaaactaaaggaaaacaaaagagtCTATCGTgcccaaa Run BLAST on NCBI protein sequence of TCONS_00042356-protein >TCONS_00042356-protein ID=TCONS_00042356-protein|Name=TCONS_00042356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
PRGCMRAPCILLLINLNLLNLLNLFNFVQKDNLPFLKLQTLEKIHNISSM
PAYQVSKAVLGSFNQANREIFGQTAGTQCSANCLYAIFWSYVRRTSIWKT
NDLDKILIEGDKLYIQLNTNDYLSVDEMPRFIEFNGVVTEINFLNSENGQ
AKLIDNYPLLQIPLSMSSIPEFDALMIIDGFTIAIMRRPQGFFVFDSHSR
NEFGLLDPFTGKSCLLKFETIFELEKYIQHFYLQEKNKDNASTKLFSL Run BLAST on NCBI transcript from alignment at sc0003362:7786..8675 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042356 ID=TCONS_00042356|Name=TCONS_00042356|organism=Clytia hemisphaerica|type=transcript|length=890bp|location=Sequence derived from alignment at sc0003362:7786..8675 (Clytia hemisphaerica)
tttgggcACGATAGactcttttgttttcctttagtttttctttgttAGTT
CCATAGTAAGTACTATTTTTCTCCTTGCACATTTTTTGACGCTTTTTATC
ATTTCCactatcaaaattattttttcgctTGATTGCACTACTCTTAAAGC
GAGAATAGCTTTGTTGAAGCATTATCTTTGTtcttttcttgtaaataaaa
atgttggatatatttttctagTTCAAATATGGTTTCAAACTTTAACAAAC
AAGATTTTCCAGTAAATGGATCGAGCAATCCAAATTCATTACGGCTATGc
gaatcaaaaacaaaaaatccttGGGGCCTTCTCATAATTGCTATTGTAAA
ACCATCAATAATCATCAATGCATCAAATTCTGGGATTGAAGACATGCTTA
GAGGTATTTGCAGAAGGGGATAATTATCAATCAATTTTGCTTGaccattt
tcagaatttaaaaaattaatttcagtaACGACACCGTTGAATTCAATGAA
TCGTGGCATTTCATCGACTgataaataatcattagtattCAGTTGTATAT
ATAATTTGTCTCCTTCTATTAAAATCTTATCTAAATCATTAGTTTTCCAA
ATCGACGTACGTCTTACATAGGACCAAAATATAGCGTAAAGACAGTTTGC
ACTGCATTGTGTACCTGCTGTTTGGCCAAATATCTCTCTATTGGCTTGAT
TAAAAGAACCCAAAACAGCTTTTGAAACTTGATAAGCTGGCATACTTGAA
ATATTGTGGATCTTTTCAAGAGTTTGAAGCTTTAAGAATGGTAGATTGTC
TTTTTGAACAAAGTTGAATAGGTTTAATAAGTTTAATAGGTTTAAATTTA
TTAGCAAGAGGATGCAAGGAGCTCGCATGCAACCTCTGGG Coding sequence (CDS) from alignment at sc0003362:7786..8675 >TCONS_00042356 ID=TCONS_00042356|Name=TCONS_00042356|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0003362:7786..8675 (Clytia hemisphaerica)
TTAAAGCGAGAATAGCTTTGTTGAAGCATTATCTTTGTtcttttcttgta
aataaaaatgttggatatatttttctagTTCAAATATGGTTTCAAACTTT
AACAAACAAGATTTTCCAGTAAATGGATCGAGCAATCCAAATTCATTACG
GCTATGcgaatcaaaaacaaaaaatccttGGGGCCTTCTCATAATTGCTA
TTGTAAAACCATCAATAATCATCAATGCATCAAATTCTGGGATTGAAGAC
ATGCTTAGAGGTATTTGCAGAAGGGGATAATTATCAATCAATTTTGCTTG
accattttcagaatttaaaaaattaatttcagtaACGACACCGTTGAATT
CAATGAATCGTGGCATTTCATCGACTgataaataatcattagtattCAGT
TGTATATATAATTTGTCTCCTTCTATTAAAATCTTATCTAAATCATTAGT
TTTCCAAATCGACGTACGTCTTACATAGGACCAAAATATAGCGTAAAGAC
AGTTTGCACTGCATTGTGTACCTGCTGTTTGGCCAAATATCTCTCTATTG
GCTTGATTAAAAGAACCCAAAACAGCTTTTGAAACTTGATAAGCTGGCAT
ACTTGAAATATTGTGGATCTTTTCAAGAGTTTGAAGCTTTAAGAATGGTA
GATTGTCTTTTTGAACAAAGTTGAATAGGTTTAATAAGTTTAATAGGTTT
AAATTTATTAGCAAGAGGATGCAAGGAGCTCGCATGCAACCTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042356-exon-sc0003362-1491911889:7786..8675 | TCONS_00042356-exon-sc0003362-1491911889:7786..8675 | Clytia hemisphaerica | exon |
| TCONS_00042356-exon-sc0003362-1510915933:7786..8675 | TCONS_00042356-exon-sc0003362-1510915933:7786..8675 | Clytia hemisphaerica | exon |
| TCONS_00042356-exon-sc0003362-1575043694:7786..8675 | TCONS_00042356-exon-sc0003362-1575043694:7786..8675 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003362 | supercontig | sc0003362:7786..8675 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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