TCONS_00042347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042347
Unique NameTCONS_00042347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042347 ID=TCONS_00042347|Name=TCONS_00042347|organism=Clytia hemisphaerica|type=transcript|length=335bp
TGACAAGATAGGTGACCAGAAGAATAAAGAGAAAGTAAAGCCCAAGCTGT
TTTACTGGAAAATCAGTCAAATTTCAGCTATTTACGATCATTTGTGATAT
GTTGTTATTTACTCATGTATATATGGTCTGGATGTGATACAACTTCTGCC
ATACATCAAAAAGGTATAAagttcttttcaataaaattacaTTCTGAtta
ttttagaatgatttttttgcatttagCAGCTGATGATGGTGATTCTATAA
CATAGCTTTTGCCAGGAAATGTACCTTCACCGTTAAGCACTTCTAAAAAA
CAACAggtttttgtttctttagggaaaacaaagat
Run BLAST on NCBI

transcript from alignment at sc0003357:4701..5035

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042347 ID=TCONS_00042347|Name=TCONS_00042347|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at sc0003357:4701..5035 (Clytia hemisphaerica)
atctttgttttccctaaagaaacaaaaaccTGTTGTTTTTTAGAAGTGCT
TAACGGTGAAGGTACATTTCCTGGCAAAAGCTATGTTATAGAATCACCAT
CATCAGCTGctaaatgcaaaaaaatcattctaaaataaTCAGAAtgtaat
tttattgaaaagaactTTATACCTTTTTGATGTATGGCAGAAGTTGTATC
ACATCCAGACCATATATACATGAGTAAATAACAACATATCACAAATGATC
GTAAATAGCTGAAATTTGACTGATTTTCCAGTAAAACAGCTTGGGCTTTA
CTTTCTCTTTATTCTTCTGGTCACCTATCTTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026193XLOC_026193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042347-exon-sc0003357-1491911889:4701..5035TCONS_00042347-exon-sc0003357-1491911889:4701..5035Clytia hemisphaericaexon
TCONS_00042347-exon-sc0003357-1510915933:4701..5035TCONS_00042347-exon-sc0003357-1510915933:4701..5035Clytia hemisphaericaexon
TCONS_00042347-exon-sc0003357-1575043694:4701..5035TCONS_00042347-exon-sc0003357-1575043694:4701..5035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003357supercontigsc0003357:4701..5035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.281565	0.549141	0.572016	0.311898	0.379706	0	2.42398	0.677793	0	0.293897	0.285263	0.187521	0.664036	0.255231	0	0.171578	0.63411	0.649942	0	0.313206	0.764055	0.398357	0	0.293506	0.302304	0	0.386082	1.18016	0	0.148405
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top