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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042345 ID=TCONS_00042345|Name=TCONS_00042345|organism=Clytia hemisphaerica|type=transcript|length=750bp
GAAATTTAGCGTCTTtagcgctccaaagtcatagcttggaatacaacaac
aaaaagcAACGAAGCAACTTGGGACGAGTTGGTTTCAGAAAGTAGAAGGT
ATAATCCCATATACTATACTGTTCTCTGCAACTTTGATACTTTATGGTTT
TGCCTTCCAGCCTGCGTTCATTCACCATGACAAATACCATATTAACCATT
AAAGTAGTTTTACACGTTggatgtaccgtcaactgctttaaagccagatt
gacattatatgtttttacgaggtctgaatcgctgcttCAAAAACGCTGAG
TTTGCACACAAAGATAGCAGctgttcaaccaatcatcaaacttTATTTTA
ATATACATTTTAATGACACAagagttttgacttcaaaatgttgaacaaga
attggaatgaattgtctgcgtttttaatggagctgagcaatgtttgtgca
atgggacaccaaaacagcaaccattttaaccgaacctccacagaatcatc
ttttttgtactgtCCAAGAATCATGGAAAtctgtttgttgttgaagaggA
TGTGACGATAGAGAGAAAAAGCTGACCAGAAAGCAGTATGTCCCATTTTA
TCTCAAGTAATCCCAGTTGACGGTACACAAACTTGACATTAACACTCCTT
TTGTTGGAGAAATTCCTGAAGGACATTTCATGTTATGTTCCTGTTGTCTG
GTtgtattttgaatcattttggttTTGGAATGCTTCTGTACCCACTgttc Run BLAST on NCBI transcript from alignment at sc0003356:5805..9053+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042345 ID=TCONS_00042345|Name=TCONS_00042345|organism=Clytia hemisphaerica|type=transcript|length=3249bp|location=Sequence derived from alignment at sc0003356:5805..9053+ (Clytia hemisphaerica)
GAAATTTAGCGTCTTtagcgctccaaagtcatagcttggaatacaacaac
aaaaagcAACGAAGCAACTTGGGACGAGTTGGTTTCAGAAAGTAGAAGGT
ATAATCCCATATACTATACTGTTCTCTGCAACTTTGATAGTAAGTATaat
actattttatcaaaagtaaggtttcagataggatgtatgattgaaaatta
ttttaaagaatttctttttgctttgtatcCTTGTTGTATAATCAGGCATC
AGTAGTCTGTCAGTTACTTTactccagacgtccgcgctcgataggatcga
tcatcgggacggctcgatgacggatcgatatgtgatcgatggattatctg
ccattaaaaagtcttaagtatcgatccttcgttgatccattatcaagcta
gtatttcaatcgagtatatcgattcgtcatcgatcgttataaatcgattc
gtcatctgttaatcgattcgtcatcgatcgttaatcaaTTTGTTATCAAT
CGTAAATCAAGTATGAGTGGATAGGGtagataagatcgataaaagatcga
tgatagatcgataaataatcgataactaatcataagaaattttgagtatc
gatcctccaTCGTCAtcaatctcctatccggatcgttaagtaatccatcg
atcacatatcgatccgtcatcgagccatTCCAATGattgatcctatcgag
cgcggacgtctggtttACTGTCAGTTAGGTACTTTacagaaattggaaaa
aactttgcataccaccattaacaaccttctgtttatctccagacgatgtc
aattgaattcaattgatccaaattttcgTAATTGAACTATCAAACAGAAT
CAAACTATAGGTGTTTGGTTACTGAACCTGATCAAAGACGACCCTGTCGa
acgaaagaaatatttctatccccagACGTACAAACAAATTGCGCTGCCAG
ATAAGTGAACCACACGGCcatgtagacctaaagctctaaaacagcatcta
ataacatgaaaaccagaatatgattcttcaatgggaatcaaaactataaa
catcaatttgtcagatatAACAAagttaataaccgcactgtcatcattga
caataaaacaaacgattttctgtcaagagccttgtaaacattccaactaa
cttccatcgaaatgatctatcacagctcagtctaccatttttagcgcggt
ccgaggattgagccgagaacgctccgcgaactcctgcgtgggtgaaaaac
ttcaatctgtcaatcattttctcaagcgaagagcacgcgaagcgattcta
gctttacgatattGCCGcaggtcatcaatggatagtattcaattatcatt
atccctttattttcattcctagaacttttgcaaaaaaaaggaaaaataga
aaagttgtatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtctatgtggcgtttttttgcaaac
ttcaaaagactgatttttgtcccgcttttgcaggactttggcttaagtgc
ttgagtgcagcatagggtacaaagtccaaacattccttttctcgtaattt
ttgtgtgacgagttaggtctacactgacgGCTGGATAAGTGAACGTGTTG
TCACGAGTTAACGCACTGTCGACTAAGTTTGCATGAAACCGTGCAGAATA
GGGATGGTGAAATTGATCATCTGATACCTAGTCCTTTAGGCGATTGCGAC
GGTCTATTGAATAAGTAACTCCACCAGCATAAATTACTTACCCCAAGATG
TGTGGGCCGGAAATCATTTGTTCTGTATTACAGAAAATTAGTTGTATAAA
TGGAAAATTTGCAACATTACCGTGTGCTACTTCGAGAGAGTTGTTAGCGT
GCCAATTTGAACAATCTTATCTGTAGGTAATATCCAATTTCCAGCTGGTT
TCACTTGCATCTACTGAAGTATGGAGGTATCATAATTTAAGCTGGTGGAA
TTAGGTATGCTAATAATTATTGCTGGTGGAAACACTTATTCAAGTCCGTC
GCGATCGCCTAAAGGAATATTGTTTAAGTACGTCTTGCAGACCACGAGTT
CAGTCCGGGGTAAGTCtcaaaaagtaatgttaaaatccttggacacgcaa
caagaaaatctctggagtccggggaatcggcagggtcgttcGAACAGTAA
TTCAACTTTACCAGAATCTTTTAGTTTCGAAAAGTCAAGTCTGGTTGCGG
TAATTTGTACTTTAACACCTATCGTTTGATAGTGTTAGATTAGATTGGTA
CCCATGAAgtgaaaaagggtaatttgCATAATTTGAGGGAAACTTTACAT
TGCCTCCAAACTGCAGACCTTTCTTGGTCTGGACTTTGTCTAAGCTAAAA
tataaattaaatgtttttgacttttgaatttttacaattttattaccAGA
AAGCTCTACTATTTGGAGGCGATACCAGTTTCCCTCCAGTGATTACCCTG
TTTCACGGTAATCAAACAGTTTGACATCACCTGgatatttattacaaatt
atctaatgacagtttcttcttctctattTCTATTTCAGCTTTATGGTTTT
GCCTTCCAGCCTGCGTTCATTCACCATGACAAATACCATATTAACCATTA
AAGTAGTTTTACACGTTggatgtaccgtcaactgctttaaagccagattg
acattatatgtttttacgaggtctgaatcgctgcttCAAAAACGCTGAGT
TTGCACACAAAGATAGCAGctgttcaaccaatcatcaaacttTATTTTAA
TATACATTTTAATGACACAagagttttgacttcaaaatgttgaacaagaa
ttggaatgaattgtctgcgtttttaatggagctgagcaatgtttgtgcaa
tgggacaccaaaacagcaaccattttaaccgaacctccacagaatcatct
tttttgtactgtCCAAGAATCATGGAAAtctgtttgttgttgaagaggAT
GTGACGATAGAGAGAAAAAGCTGACCAGAAAGCAGTATGTCCCATTTTAT
CTCAAGTAATCCCAGTTGACGGTACACAAACTTGACATTAACACTCCTTT
TGTTGGAGAAATTCCTGAAGGACATTTCATGTTATGTTCCTGTTGTCTGG
TtgtattttgaatcattttggttTTGGAATGCTTCTGTACCCACTgttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042345-exon-sc0003356-1491911889:5805..5943 | TCONS_00042345-exon-sc0003356-1491911889:5805..5943 | Clytia hemisphaerica | exon |
| TCONS_00042345-exon-sc0003356-1510915933:5805..5943 | TCONS_00042345-exon-sc0003356-1510915933:5805..5943 | Clytia hemisphaerica | exon |
| TCONS_00042345-exon-sc0003356-1575043694:5805..5943 | TCONS_00042345-exon-sc0003356-1575043694:5805..5943 | Clytia hemisphaerica | exon |
| TCONS_00042345-exon-sc0003356-1491911889:8443..9053 | TCONS_00042345-exon-sc0003356-1491911889:8443..9053 | Clytia hemisphaerica | exon |
| TCONS_00042345-exon-sc0003356-1510915933:8443..9053 | TCONS_00042345-exon-sc0003356-1510915933:8443..9053 | Clytia hemisphaerica | exon |
| TCONS_00042345-exon-sc0003356-1575043694:8443..9053 | TCONS_00042345-exon-sc0003356-1575043694:8443..9053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003356 | supercontig | sc0003356:5805..9053 + |
Blast
The following BLAST results are available for this feature:
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