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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042342 ID=TCONS_00042342|Name=TCONS_00042342|organism=Clytia hemisphaerica|type=transcript|length=1725bp
AATTTAtatcaggacaatttttttgagtcgacaataaattagttatcaca
tgacttctcgtgcaatactcgatattttactcgttccgagatttttccgt
aatatttttccgagcctttaggcgtaAAAtattcgtaaaatatttctcgt
attgcactcgaagtcatgcgataactagtacatattttagaaaaatttag
aaatttcaggaggggcagcgtccgatgaCCGGACGCTAAAAGGACATGAA
AAATGGCCAGACTACTATGGAaaaatacgttttcgagtgtttctaaagaa
ggcggaatacactataGTACTTTTCCGGGCGTGTTACAATGGCGATGAAA
TTGGTTTCCAGCAAATTAGAATGGACTTATTTTAAAGGGACATAACAATA
CTTGCGAAATTTGTAAACAAACTGTATGCAGCGGATACAAAATCAAAACA
AATGTCACATGTTAAAATAAAAAATCAAACCAAGTATGGCTAATTTTGAT
TGTTCAATTGTTTTACAAGTTTGTTTCGGACACGTGATTTTAATTGTTCT
CTTTAAAAATGACACGTGGTTTGCGCAATGTTTACATTTTACTACTTTTA
TGTCCCTTTAAACGCATAGTGACGGAGAGAAGAGGAAGAGAATCGATTCC
AAAGAAAACCCAAAAAGGTATAGACATGAATGATTTATGGTTAAGTATAA
AATTGACGAAAATCCTTTGTCTGAAAAGTCGAATCCCACTCGGGACTCAA
GTCCAATTAGGCCGCTTGTTTGAGTTTTTTTCTTGGTGCTTTCTATAGCG
CAATTAATTTCAAATTTTACATCATTTATAGCTTCATATTATTGTCATCC
GTCCATTTGTATATTCTTTCAAGACTTTTGACTTCTTTTGTAATTGTAGC
ACGAATGTCATCAGCGAAAAACTTAACAAAGCTGTGCACCACTTCCTTGT
CAATATCCCCAATTAGCACGAGGAAAATCAGAGGCCCCAACACACACTAC
CTTGAGGGACTCATGAAACAACATGCTGTGATTCAGAAGTCAGAATCAAT
ATTATCGACCGTATATATACTGTACAGAGGTTTTTCCAAGCACTGAGCAA
TGCCCCCGTTTGGAGTGCCAAATTGAGTTTCCAATTAAAGGCGTAAGCGG
ATATATCTAGCCAAAGGCTGgaaatttgaggctcaaagtcaTCAAGGGGG
CGCCTTAAATCTCCCCCCAGTATTTCAAACAGCTTTCTTAGAAGTTTATC
TATTTTACagtaaaaacaaatttaaaacaagACCAGATATGTTGAGAATT
AGACATGGTATGACAGCATCACACAAAGTTTTCTTATCGATAAAAATTGA
TTATCAATGAGTAATCCATAATAACGGATACACCGCAAAGttgatgtcaa
tcgaactgtttgattatcgaactaatcaaacctAATTGGACAGTAATCGA
ACGATGGGTGTTTGATTACAGAACCAAATCAATCAAGAACAACAATCTAA
CCAAGAAATTTCAGTTAAAGTTTGATGACTGTTGATCTGTTACCTTTGAT
TGCGATATGATTATAGTTCGATAGGTTCACTTGTAGTTTGATAGGTTTGA
TCTTACTGTAGTTAGACATTCATTCAATAAGTGTCTGGTTTTTTTCTGGG
CCATTTTCGCAACAGTATACCCAAGAAAAATAGAGGAATGATTCCGGAAA
AGTACCAAGATACTACTCAAACACT Run BLAST on NCBI transcript from alignment at sc0003351:3632..5356 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042342 ID=TCONS_00042342|Name=TCONS_00042342|organism=Clytia hemisphaerica|type=transcript|length=1725bp|location=Sequence derived from alignment at sc0003351:3632..5356 (Clytia hemisphaerica)
AGTGTTTGAGTAGTATCTTGGTACTTTTCCGGAATCATTCCTCTATTTTT
CTTGGGTATACTGTTGCGAAAATGGCCCAGAAAAAAACCAGACACTTATT
GAATGAATGTCTAACTACAGTAAGATCAAACCTATCAAACTACAAGTGAA
CCTATCGAACTATAATCATATCGCAATCAAAGGTAACAGATCAACAGTCA
TCAAACTTTAACTGAAATTTCTTGGTTAGATTGTTGTTCTTGATTGATTT
GGTTCTGTAATCAAACACCCATCGTTCGATTACTGTCCAATTaggtttga
ttagttcgataatcaaacagttcgattgacatcaaCTTTGCGGTGTATCC
GTTATTATGGATTACTCATTGATAATCAATTTTTATCGATAAGAAAACTT
TGTGTGATGCTGTCATACCATGTCTAATTCTCAACATATCTGGTcttgtt
ttaaatttgtttttactGTAAAATAGATAAACTTCTAAGAAAGCTGTTTG
AAATACTGGGGGGAGATTTAAGGCGCCCCCTTGAtgactttgagcctcaa
atttcCAGCCTTTGGCTAGATATATCCGCTTACGCCTTTAATTGGAAACT
CAATTTGGCACTCCAAACGGGGGCATTGCTCAGTGCTTGGAAAAACCTCT
GTACAGTATATATACGGTCGATAATATTGATTCTGACTTCTGAATCACAG
CATGTTGTTTCATGAGTCCCTCAAGGTAGTGTGTGTTGGGGCCTCTGATT
TTCCTCGTGCTAATTGGGGATATTGACAAGGAAGTGGTGCACAGCTTTGT
TAAGTTTTTCGCTGATGACATTCGTGCTACAATTACAAAAGAAGTCAAAA
GTCTTGAAAGAATATACAAATGGACGGATGACAATAATATGAAGCTATAA
ATGATGTAAAATTTGAAATTAATTGCGCTATAGAAAGCACCAAGAAAAAA
ACTCAAACAAGCGGCCTAATTGGACTTGAGTCCCGAGTGGGATTCGACTT
TTCAGACAAAGGATTTTCGTCAATTTTATACTTAACCATAAATCATTCAT
GTCTATACCTTTTTGGGTTTTCTTTGGAATCGATTCTCTTCCTCTTCTCT
CCGTCACTATGCGTTTAAAGGGACATAAAAGTAGTAAAATGTAAACATTG
CGCAAACCACGTGTCATTTTTAAAGAGAACAATTAAAATCACGTGTCCGA
AACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCATACTTGGTTTG
ATTTTTTATTTTAACATGTGACATTTGTTTTGATTTTGTATCCGCTGCAT
ACAGTTTGTTTACAAATTTCGCAAGTATTGTTATGTCCCTTTAAAATAAG
TCCATTCTAATTTGCTGGAAACCAATTTCATCGCCATTGTAACACGCCCG
GAAAAGTACtatagtgtattccgccttctttagaaacactcgaaaacgta
ttttTCCATAGTAGTCTGGCCATTTTTCATGTCCTTTTAGCGTCCGGtca
tcggacgctgcccctcctgaaatttctaaatttttctaaaatatgtacta
gttatcgcatgacttcgagtgcaatacgagaaatattttacgaataTTTt
acgcctaaaggctcggaaaaatattacggaaaaatctcggaacgagtaaa
atatcgagtattgcacgagaagtcatgtgataactaatttattgtcgact
caaaaaaattgtcctgataTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042342-exon-sc0003351-1491911889:3632..5356 | TCONS_00042342-exon-sc0003351-1491911889:3632..5356 | Clytia hemisphaerica | exon |
| TCONS_00042342-exon-sc0003351-1510915933:3632..5356 | TCONS_00042342-exon-sc0003351-1510915933:3632..5356 | Clytia hemisphaerica | exon |
| TCONS_00042342-exon-sc0003351-1575043694:3632..5356 | TCONS_00042342-exon-sc0003351-1575043694:3632..5356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003351 | supercontig | sc0003351:3632..5356 . |
Blast
The following BLAST results are available for this feature:
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