TCONS_00042340 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00042340
Unique Name	TCONS_00042340
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1557

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0003351:8616..11385+
coding sequence from alignment at sc0003351:8616..11385+

transcript sequence

>TCONS_00042340 ID=TCONS_00042340|Name=TCONS_00042340|organism=Clytia hemisphaerica|type=transcript|length=1557bp
attaattaataaataaaatcaaGAATTATCCTCTTCTTTGCGGAAAGACT
TCAATTTATCAGTCAGCTTTAAATTGACagtagtttttgactttttggcc
cCAAGAGCTTTTAGTTCTGGCTGATGATTGAAGAGTACTCCTgtaaatga
taataaaatgaTGCGTTAatgaaagaagaacttaaaattgCAGTCAATTT
TTGTAAAGAATAAGTCATAAAAAGCGCAACTTTGGATTGTACTTATTTTC
TGTAAAAGCTTCTAACAGTTTGTAGTGTCACTGCAGAGCCAATTGATGAT
TGCAATCTCATTTTTATCATTAAACATATATTGCGACTATGTGATTCTTC
TctatttcgttctttttgttCTTTCCAGGTTTCAGTGCAAAAACGTGGCT
CTTTGGGGACTCTGGCAAGGAAAAGGAAAACCTCCGGTCTACCCATTCTT
AAAACCATTCACTCAAGAATTAGTGAACTTATGTCAAGAAGGCTTAACAT
tggaaaataaacaaacaatcaAGATGTATACACTGCTTGGCTCATTAGAT
CTCATTGCTAAAGCTCCTATTTTGAACATGAACCAACATAATGGATATTT
TGGATGCAATAAATGCCTTATAGAAGGGGAACATTTGAACAATGTTCATG
TGTATCCATATAACGAGTCAAAGAAAGCAATATCACGTACAAATGATGGT
TGCTATAATGATGCAAAAAAGGCAATTCTCAGTGGTAAAAAGgaaaatgG
TATTAAAGGACCATCTTGTCTAATGCTTTTACCAGAATTTGATCTTTGTG
ATGGTATTGTGCCAGATTACATGCATGGACTTTTACTGGGTATTACAAAG
TGTTTGTTGTCTTTGTGGTTTGATCCTGCAGAACACAAGAAATTTTACAA
GGAACGCAAAATGTACCCTGATTATCATATCAGTCACTTACTATGTATAT
GATGTTGACAAGCGACTCGAAAATATGAGACCCTTGGATGTAATTTCTAG
AAGACCACGTCCCTTATCTGGAAATATTGGGCATCTTaaagCCAACGAAT
TGAGATCATGGTTGCTGTATTACTCATTACCATGTATGGAATGTATCTTA
CCAGAAATTTACTGGAATCATTTTGCACTCCTCGTTGAAGGAACACATAT
TTTATTGGCAGACAAGATCAGTAAAGATGATCTATCATGGGCTGAATCAT
GTTTGGATTTGTTTTATAAATACTTTGAAGAGTTATATGCTAAAACTAAA
TGTGGGTTAAATGTACATAACTGCAGCCACCTTTGTCAATCTGTCCGAAA
CTGGGGTCCATTGTGGGCATGGTCTTGCTTTGGTTTCGAAAGTTTGAATG
GTAGAATTATAAAACAAGTACATGGTACAAGGAATGCTTGTTCTCAGGTA
TTTAAAGCTTTCAGTGGACTCAAGACTATTCACAGCATGATGAGTGATgg
aagaacaaaagaaattgtTAAAGAGGGTTTGACTTCAATGATAATCAACA
AACAAAGtggTGGTATGAATAATTGGAAGGTGGTAAATGATGCAATCTCA
TTAGGAG

Run BLAST on NCBI

protein sequence of TCONS_00042340-protein

>TCONS_00042340-protein ID=TCONS_00042340-protein|Name=TCONS_00042340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MVLCQITCMDFYWVLQSVCCLCGLILQNTRNFTRNAKCTLIIISVTYYVY
DVDKRLENMRPLDVISRRPRPLSGNIGHLKANELRSWLLYYSLPCMECIL
PEIYWNHFALLVEGTHILLADKISKDDLSWAESCLDLFYKYFEELYAKTK
CGLNVHNCSHLCQSVRNWGPLWAWSCFGFESLNGRIIKQVHGTRNACSQV
FKAFSGLKTIHSMMSDGRTKEIVKEGLTSMIINKQSGGMNNWKVVNDAIS
LG

Run BLAST on NCBI

transcript from alignment at sc0003351:8616..11385+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00042340 ID=TCONS_00042340|Name=TCONS_00042340|organism=Clytia hemisphaerica|type=transcript|length=2770bp|location=Sequence derived from alignment at sc0003351:8616..11385+ (Clytia hemisphaerica)
attaattaataaataaaatcaaGAATTATCCTCTTCTTTGCGGAAAGACT
TCAATTTATCAGTCAGCTTTAAATTGACagtagtttttgactttttggcc
cCAAGAGCTTTTAGTTCTGGCTGATGATTGAAGAGTACTCCTgtaaatga
taataaaatgaTGCGTTAatgaaagaagaacttaaaattgCAGTCAATTT
TTGTAAAGAATAAGTCATAAAAAGCGCAACTTTGGATTGTACTTATTTTC
TGTAAAAGCTTCTAACAGTTTGTAGTGTCACTGCAGAGCCAATTGATGAT
TGCAATCTCATTTTTATCATTAAACATATATTGCGACTATGTGATTCTTC
TctatttcgttctttttgttCTTTCCAGGTTTCAGTGCAAAAACGTGGCT
CTTTGGGGACTCTGGCAAGGAAAAGGAAAACCTCCGGTCTACCCATTCTT
AAAACCATTCACTCAAGAATTAGTGAACTTATGTCAAGAAGGTAAAGACT
TTTTTTCTCTCACTGAGcgagttttcaaatttatcatcTAGTTCACAGTA
CATACTCGTTATGGTATAATTTACTACAGTAAGCGACATATTGATAAAAG
GGGTCAGATAAATAgcttcattcattcatttatctCAGGCTTAACATtgg
aaaataaacaaacaatcaAGATGTATACACTGCTTGGCTCATTAGATCTC
ATTGCTAAAGCTCCTATTTTGAACATGAACCAACATAATGGATATTTTGG
ATGCAATAAATGCCTTATAGAAGGGGAACATTTGAACAATGTTCATGTGT
ATCCATATAACGAGTCAAAGAAAGCAATATCACGTACAAATGATGGTTGC
TATAATGATGCAAAAAAGGCAATTCTCAGTGGTAAAAAGGTAAGATGACA
ACATAAGAATTCATGAatctcttttcttttgatttggtAAGCTCTATGCA
AAATATGAACATGATTGCATACATAAAGTAACCTTTAATTGATTCAACAA
ttctttttcaggaaaatgGTATTAAAGGACCATCTTGTCTAATGCTTTTA
CCAGAATTTGATCTTTGTGATGGTATTGTGCCAGATTACATGCATGGACT
TTTACTGGGTATTACAAAGTGTTTGTTGTCTTTGTGGTTTGATCCTGCAG
AACACAAGAAATTTTACAAGGAACGCAAAATGTACCCTGATTATCATATC
AGTCACTTAGTAAGTTATCAATATTCTTGCACTTGCTACAGCAagttttt
gatatatttttataataccaCCCCTTCATTTTGTAGAAGCAGAATCTTTT
TAAACAGTTTGAAAGATAAtcagatatgtttttttttgcttctatATTCA
GCTATGTATATGATGTTGACAAGCGACTCGAAAATATGAGACCCTTGGAT
GTAATTTCTAGAAGACCACGTCCCTTATCTGGAAATATTGGGCATCTTaa
aggtaatttttcaaagctaAGTTTGcgcttttgaaaaatgatttgagCAA
AAAGATTTAATCAACAGTATTAACTAAAACATACATTCCTTAATTTTTAA
GCCAACGAATTGAGATCATGGTTGCTGTATTACTCATTACCATGTATGGA
ATGTATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCTCGTTGAAG
GAACACATATTTTATTGGCAGACAAGATCAGTAAAGATGATCTATCATGG
GCTGAATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAGTTATATGG
TGAGTTACATTATATTCTAGTTGGTATTAGAtaccttttaagaaaatatg
aaaaaccaAATATCTGCACAATTTCAAATAAATCAGAATAGATAGTTGGT
GAGTTAAGCTAGGTGAAAATTAATGTTGGTGAAAGGCATAAAGTTGCATT
AGAGTTGCATAGAGTTTTAGTATTTTGTTCAACTCTTAGTATTTCATAAT
GCTCTGTAAAGATTTCTTGTGTGAAACAGTTGACCTAAGTGGTTTTATTG
AATTTTCCAGCTAAAACTAAATGTGGGTTAAATGTACATAACTGCAGCCA
CCTTTGTCAATCTGTCCGAAACTGGGGTCCATTGTGGGCATGGTCTTGCT
TTGGTTTCGAAAGTTTGAATGGTAGAATTATAAAACAAGTACATGGTACA
AGGAATGCTTGTTCTCAGGTAAATATCTTGTCTTGATTAGAAATCTCTTT
CTTCGAATAAAAAAGGGTGAATGGAAACAAATGGCAATTCATCTCAGGAG
ACAAAACTTTggcagaaagaaattttggagaATTTGACAAGTTGTTTGAA
ATATTGCCTgtattcgccaaaatttcttcccaaaTATCATGTTTTTACGC
TACACCCTCCATTAAGATACATTTAATTTATTTGAATCCAATATTTATGG
CCAAATACTTTTTTAGGTATTTAAAGCTTTCAGTGGACTCAAGACTATTC
ACAGCATGATGAGTGATggaagaacaaaagaaattgtTAAAGAGGGTTTG
ACTTCAATGATAATCAACAAACAAAGGTattaaaaattctcatttcagGT
TTTTCCCAACCTGATTGTAAGATTGAACCTTTTGTCGTAATGGTTAAGCA
CCTTTGAATGGATctaaaaaagaatttattttattcttcGCGACCATGAG
AGAGATttcttatattttcttttttttttttaaaaagtccaAATACCAAC
atccaaattaattttttcagtggTGGTATGAATAATTGGAAGGTGGTAAA
TGATGCAATCTCATTAGGAG

Coding sequence (CDS) from alignment at sc0003351:8616..11385+

>TCONS_00042340 ID=TCONS_00042340|Name=TCONS_00042340|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0003351:8616..11385+ (Clytia hemisphaerica)
ATGGTATTGTGCCAGATTACATGCATGGACTTTTACTGGGTATTACAAAG
TGTTTGTTGTCTTTGTGGTTTGATCCTGCAGAACACAAGAAATTTTACAA
GGAACGCAAAATGTACCCTGATTATCATATCAGTCACTTACTATGTATAT
GATGTTGACAAGCGACTCGAAAATATGAGACCCTTGGATGTAATTTCTAG
AAGACCACGTCCCTTATCTGGAAATATTGGGCATCTTaaagCCAACGAAT
TGAGATCATGGTTGCTGTATTACTCATTACCATGTATGGAATGTATCTTA
CCAGAAATTTACTGGAATCATTTTGCACTCCTCGTTGAAGGAACACATAT
TTTATTGGCAGACAAGATCAGTAAAGATGATCTATCATGGGCTGAATCAT
GTTTGGATTTGTTTTATAAATACTTTGAAGAGTTATATGCTAAAACTAAA
TGTGGGTTAAATGTACATAACTGCAGCCACCTTTGTCAATCTGTCCGAAA
CTGGGGTCCATTGTGGGCATGGTCTTGCTTTGGTTTCGAAAGTTTGAATG
GTAGAATTATAAAACAAGTACATGGTACAAGGAATGCTTGTTCTCAGGTA
TTTAAAGCTTTCAGTGGACTCAAGACTATTCACAGCATGATGAGTGATgg
aagaacaaaagaaattgtTAAAGAGGGTTTGACTTCAATGATAATCAACA
AACAAAGtggTGGTATGAATAATTGGAAGGTGGTAAATGATGCAATCTCA
TTAGGAATGGTATTGTGCCAGATTACATGCATGGACTTTTACTGGGTATT
ACAAAGTGTTTGTTGTCTTTGTGGTTTGATCCTGCAGAACACAAGAAATT
TTACAAGGAACGCAAAATGTACCCTGATTATCATATCAGTCACTTACTAT
GTATATGATGTTGACAAGCGACTCGAAAATATGAGACCCTTGGATGTAAT
TTCTAGAAGACCACGTCCCTTATCTGGAAATATTGGGCATCTTaaagCCA
ACGAATTGAGATCATGGTTGCTGTATTACTCATTACCATGTATGGAATGT
ATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCTCGTTGAAGGAAC
ACATATTTTATTGGCAGACAAGATCAGTAAAGATGATCTATCATGGGCTG
AATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAGTTATATGCTAAA
ACTAAATGTGGGTTAAATGTACATAACTGCAGCCACCTTTGTCAATCTGT
CCGAAACTGGGGTCCATTGTGGGCATGGTCTTGCTTTGGTTTCGAAAGTT
TGAATGGTAGAATTATAAAACAAGTACATGGTACAAGGAATGCTTGTTCT
CAGGTATTTAAAGCTTTCAGTGGACTCAAGACTATTCACAGCATGATGAG
TGATggaagaacaaaagaaattgtTAAAGAGGGTTTGACTTCAATGATAA
TCAACAAACAAAGtggTGGTATGAATAATTGGAAGGTGGTAAATGATGCA
ATCTCATTAGGAATGGTATTGTGCCAGATTACATGCATGGACTTTTACTG
GGTATTACAAAGTGTTTGTTGTCTTTGTGGTTTGATCCTGCAGAACACAA
GAAATTTTACAAGGAACGCAAAATGTACCCTGATTATCATATCAGTCACT
TACTATGTATATGATGTTGACAAGCGACTCGAAAATATGAGACCCTTGGA
TGTAATTTCTAGAAGACCACGTCCCTTATCTGGAAATATTGGGCATCTTa
aagCCAACGAATTGAGATCATGGTTGCTGTATTACTCATTACCATGTATG
GAATGTATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCTCGTTGA
AGGAACACATATTTTATTGGCAGACAAGATCAGTAAAGATGATCTATCAT
GGGCTGAATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAGTTATAT
GCTAAAACTAAATGTGGGTTAAATGTACATAACTGCAGCCACCTTTGTCA
ATCTGTCCGAAACTGGGGTCCATTGTGGGCATGGTCTTGCTTTGGTTTCG
AAAGTTTGAATGGTAGAATTATAAAACAAGTACATGGTACAAGGAATGCT
TGTTCTCAGGTATTTAAAGCTTTCAGTGGACTCAAGACTATTCACAGCAT
GATGAGTGATggaagaacaaaagaaattgtTAAAGAGGGTTTGACTTCAA
TGATAATCAACAAACAAAGtggTGGTATGAATAATTGGAAGGTGGTAAAT
GATGCAATCTCATTAGGAATGGTATTGTGCCAGATTACATGCATGGACTT
TTACTGGGTATTACAAAGTGTTTGTTGTCTTTGTGGTTTGATCCTGCAGA
ACACAAGAAATTTTACAAGGAACGCAAAATGTACCCTGATTATCATATCA
GTCACTTACTATGTATATGATGTTGACAAGCGACTCGAAAATATGAGACC
CTTGGATGTAATTTCTAGAAGACCACGTCCCTTATCTGGAAATATTGGGC
ATCTTaaagCCAACGAATTGAGATCATGGTTGCTGTATTACTCATTACCA
TGTATGGAATGTATCTTACCAGAAATTTACTGGAATCATTTTGCACTCCT
CGTTGAAGGAACACATATTTTATTGGCAGACAAGATCAGTAAAGATGATC
TATCATGGGCTGAATCATGTTTGGATTTGTTTTATAAATACTTTGAAGAG
TTATATGCTAAAACTAAATGTGGGTTAAATGTACATAACTGCAGCCACCT
TTGTCAATCTGTCCGAAACTGGGGTCCATTGTGGGCATGGTCTTGCTTTG
GTTTCGAAAGTTTGAATGGTAGAATTATAAAACAAGTACATGGTACAAGG
AATGCTTGTTCTCAGGTATTTAAAGCTTTCAGTGGACTCAAGACTATTCA
CAGCATGATGAGTGATggaagaacaaaagaaattgtTAAAGAGGGTTTGA
CTTCAATGATAATCAACAAACAAAGtggTGGTATGAATAATTGGAAGGTG
GTAAATGATGCAATCTCATTAGGAATGGTATTGTGCCAGATTACATGCAT
GGACTTTTACTGGGTATTACAAAGTGTTTGTTGTCTTTGTGGTTTGATCC
TGCAGAACACAAGAAATTTTACAAGGAACGCAAAATGTACCCTGATTATC
ATATCAGTCACTTACTATGTATATGATGTTGACAAGCGACTCGAAAATAT
GAGACCCTTGGATGTAATTTCTAGAAGACCACGTCCCTTATCTGGAAATA
TTGGGCATCTTaaagCCAACGAATTGAGATCATGGTTGCTGTATTACTCA
TTACCATGTATGGAATGTATCTTACCAGAAATTTACTGGAATCATTTTGC
ACTCCTCGTTGAAGGAACACATATTTTATTGGCAGACAAGATCAGTAAAG
ATGATCTATCATGGGCTGAATCATGTTTGGATTTGTTTTATAAATACTTT
GAAGAGTTATATGCTAAAACTAAATGTGGGTTAAATGTACATAACTGCAG
CCACCTTTGTCAATCTGTCCGAAACTGGGGTCCATTGTGGGCATGGTCTT
GCTTTGGTTTCGAAAGTTTGAATGGTAGAATTATAAAACAAGTACATGGT
ACAAGGAATGCTTGTTCTCAGGTATTTAAAGCTTTCAGTGGACTCAAGAC
TATTCACAGCATGATGAGTGATggaagaacaaaagaaattgtTAAAGAGG
GTTTGACTTCAATGATAATCAACAAACAAAGtggTGGTATGAATAATTGG
AAGGTGGTAAATGATGCAATCTCATTAGGAATGGTATTGTGCCAGATTAC
ATGCATGGACTTTTACTGGGTATTACAAAGTGTTTGTTGTCTTTGTGGTT
TGATCCTGCAGAACACAAGAAATTTTACAAGGAACGCAAAATGTACCCTG
ATTATCATATCAGTCACTTACTATGTATATGATGTTGACAAGCGACTCGA
AAATATGAGACCCTTGGATGTAATTTCTAGAAGACCACGTCCCTTATCTG
GAAATATTGGGCATCTTaaagCCAACGAATTGAGATCATGGTTGCTGTAT
TACTCATTACCATGTATGGAATGTATCTTACCAGAAATTTACTGGAATCA
TTTTGCACTCCTCGTTGAAGGAACACATATTTTATTGGCAGACAAGATCA
GTAAAGATGATCTATCATGGGCTGAATCATGTTTGGATTTGTTTTATAAA
TACTTTGAAGAGTTATATGCTAAAACTAAATGTGGGTTAAATGTACATAA
CTGCAGCCACCTTTGTCAATCTGTCCGAAACTGGGGTCCATTGTGGGCAT
GGTCTTGCTTTGGTTTCGAAAGTTTGAATGGTAGAATTATAAAACAAGTA
CATGGTACAAGGAATGCTTGTTCTCAGGTATTTAAAGCTTTCAGTGGACT
CAAGACTATTCACAGCATGATGAGTGATggaagaacaaaagaaattgtTA
AAGAGGGTTTGACTTCAATGATAATCAACAAACAAAGtggTGGTATGAAT
AATTGGAAGGTGGTAAATGATGCAATCTCATTAGGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026186	XLOC_026186	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00042340-protein	TCONS_00042340-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003351	supercontig	sc0003351:8616..11385 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173127	0	0	0	2.60505	2.67589	2.03022	3.61126	1.23613	1.19887	1.13642	0.644152	1.78525	1.85715	0.0160272	0.0715224	0	0.0810029	0	0	0.0254465	0	0	0.0274349	0.667365	2.06488	0	0	0.0584236	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00042340 vs. Swiss-Prot (Human)

BLAST of TCONS_00042340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00042340 (transcript) - C. hemisphaerica