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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042318 ID=TCONS_00042318|Name=TCONS_00042318|organism=Clytia hemisphaerica|type=transcript|length=2019bp
GTAGGATTTACTTTTAAAGCTGGAGAACAACAAGCAACAAttgaacgaaa
aagaaaaacacattCAAGCAGCACGAACACAACTCAACAAATCGGAAAAA
gttACATACTAGTATttttgatatgcgtaagtcaagatgacgtcattttt
cctaacggaagcacccgaaaaaGCCGGGTTttgacctctgtttttctaat
tttagtAACAgatcaaatcccggcttttttcgggtgtttctgttagaaaa
atgacttgcgcatatcaagaatatacACTGGTTTGCCTGCACAAAATCAA
GTGTAATATATATTTACTCGATGACAGAACGGACCAGCATgttatattta
catttttaataaaaacgttTGACTAAAAATACGACTGAGAAGACCAGCCT
GGtaatatatacattttaaaaacgatgaaaagaaaatgttttaagttaat
cttttgacagacttttttaatttttgagtgTCTCGTGGATTAAAAAGACA
CAAGCGGTAACAGGTTAAcagtaaaaattaaaaaaatcttagaATTTGAG
tcctctcaaataaaaacaagcgaaGTTGATATTTGGTTAATGACGCTTGT
GAATTCAAAATTAGGCTACAACACTTACAATGTTAAGTTGAAAAAAACGG
Aggctaaaaaatatataaaatataaacgatgcttgaaaaagaaaaatttc
tattttagtcTAGTCACTTTCACTGTCACTGTCGTCATCGAACATTTTAA
ATCGTTTTGGTAGGGGTGGACTGACTTGATCTTGAAATGGCAAGCTGACT
TCATTCTGAGATGGTGATGGTCTGTGTTGTGGTGGTGGGCTTTTTCTTTT
CCTGCCTGATCCACCATGTTTATCAGGAGCAAATTTCAACACATCTATCA
TTGCATTGTAAACGTCATCCTCGGTCCCCTTACCAGAGTCTACGACTGCT
TCTATAAATCAAATGTAAACAGCACATGAAGAATTGAGACAAAACGAAGC
ATAGATAAAAGCatactacagttgacgctctccaaTTCGAGGTTTACCTC
CAGACAGAGCTACACCCCCGGACAAGGGAAATTTCgatgatttttcacta
ccccccggacaatatatcctccaccccctatgtacgaacattttctggaa
gagcccattccaTGTTTTGACTTTTATATCCCTCGAGATATTTTGTAAAG
TGACAGTACAATCAATCAAACCCGGCATTATTTCCTGGAAAACTATAACC
AAGATTAAAATGTACTCACTGCGAACtgcttggaaaacttttgtgtcTTT
AAATCTTCTTTTCGGCTCACAATTTGACTTGACCGTGCCGCACATGTTAA
ATTCCGACATAAGTTTATACGTCATAACTCTGAAAAGatagattttagat
tttagcaTAATATTGTACTCCTGAAATAGAGTGAAAAAATAGGCTATTAt
ggaagaaaatgaaagaattctTTTGATAATGGGGatctttaaataaaagt
aaaatagaGGTACGTTAGAAAAAATCGGGGTGGGGTTATTTTAGGCCCCC
AAGAGAGAATTTCTCTATGGATTGAATAGACTAAAGAAGACAAATGACCA
TGTCaacctacatgtttttttttataagcaagtgtctgcccctatatcag
gctcgcattatgcttagcattctattgttctcaaacaatggAGCCATTGT
TACGGtgccaaaaactgagcctgcgtatgcttataaacgttatgcttata
aaagaaaaaacatgtatcaacTTTGGTTCCAACTTCATAATAACACATTT
TTAGTTTTGGTAAACCTCATTAAAAGATACTTATATCCCCAGAAAGGAAA
TTTATTCAGCCTAATCCTACTAATCAATTGTCAGCCTCGAATCTAGAgta
aacttaaaaaaatgttacaaataCTCTACTATTTTTGACCAGCGTCAACC
TCTTTGTAATCTTACCTTAGCATGGAGTTCTTAGTGgcttctttgcaatc
ttttcCACCTATGTACTTC Run BLAST on NCBI transcript from alignment at sc0003344:9995..12460- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042318 ID=TCONS_00042318|Name=TCONS_00042318|organism=Clytia hemisphaerica|type=transcript|length=2466bp|location=Sequence derived from alignment at sc0003344:9995..12460- (Clytia hemisphaerica)
GTAGGATTTACTTTTAAAGCTGGAGAACAACAAGCAACAATTGAACGAAA
AAGAAAAACACATTCAAGCAGCACGAACACAACTCAACAAATCGGAAAAA
GTAAGAGAAACTTTTAAAAGGGAGAAAAATTGAAAAATTTGACAAAAAGA
ATATACCCTAATTGAGAAATTAATTTTCTCAGCCATCCGTAAAATTTAAA
AATTTCTGCATTCCCTAAATCTATATTAGGCCTAAAAAGGGCTGACTTTC
CGTCGATCTTTTCCCAGCTGGCACACAAACGTTGAATTAACGTTGGAATA
AAGTTACTCTGTTAAGTTGTACCAACGTTGCCCTTAAGTTAGGAAATGAG
AGTTTTTTTGACGTTAAGATTATGACGTGAAATAAACGTTGCCGAAATAA
TGTTGTGAAAACGTTATTATATGGTTTTATGTCTAGTTATGAAAAACCGA
TATTACAACTGTACTCAGATCTGTTACTTGTTCCAAAATGGCGGAGCAAA
CTAGAAAACGGTATCTTTTCATGTTCAAAAATATTTTCTTTTTTCAGGTT
ACATACTAGTATTTTTGATATGCGTAAGTCAAGATGACGTCATTTTTCCT
AACGGAAGCACCCGAAAAAGCCGGGTTTTGACCTCTGTTTTTCTAATTTT
AGTAACAGATCAAATCCCGGCTTTTTTCGGGTGTTTCTGTTAGAAAAATG
ACTTGCGCATATCAAGAATATACACTGGTTTGCCTGCACAAAATCAAGTG
TAATATATATTTACTCGATGACAGAACGGACCAGCATGTTATATTTACAT
TTTTAATAAAAACGTTTGACTAAAAATACGACTGAGAAGACCAGCCTGGT
AATATATACATTTTAAAAACGATGAAAAGAAAATGTTTTAAGTTAATCTT
TTGACAGACTTTTTTAATTTTTGAGTGTCTCGTGGATTAAAAAGACACAA
GCGGTAACAGGTTAACAGTAAAAATTAAAAAAATCTTAGAATTTGAGTCC
TCTCAAATAAAAACAAGCGAAGTTGATATTTGGTTAATGACGCTTGTGAA
TTCAAAATTAGGCTACAACACTTACAATGTTAAGTTGAAAAAAACGGAGG
CTAAAAAATATATAAAATATAAACGATGCTTGAAAAAGAAAAATTTCTAT
TTTAGTCTAGTCACTTTCACTGTCACTGTCGTCATCGAACATTTTAAATC
GTTTTGGTAGGGGTGGACTGACTTGATCTTGAAATGGCAAGCTGACTTCA
TTCTGAGATGGTGATGGTCTGTGTTGTGGTGGTGGGCTTTTTCTTTTCCT
GCCTGATCCACCATGTTTATCAGGAGCAAATTTCAACACATCTATCATTG
CATTGTAAACGTCATCCTCGGTCCCCTTACCAGAGTCTACGACTGCTTCT
ATAAATCAAATGTAAACAGCACATGAAGAATTGAGACAAAACGAAGCATA
GATAAAAGCATACTACAGTTGACGCTCTCCAATTCGAGGTTTACCTCCAG
ACAGAGCTACACCCCCGGACAAGGGAAATTTCGATGATTTTTCACTACCC
CCCGGACAATATATCCTCCACCCCCTATGTACGAACATTTTCTGGAAGAG
CCCATTCCATGTTTTGACTTTTATATCCCTCGAGATATTTTGTAAAGTGA
CAGTACAATCAATCAAACCCGGCATTATTTCCTGGAAAACTATAACCAAG
ATTAAAATGTACTCACTGCGAACTGCTTGGAAAACTTTTGTGTCTTTAAA
TCTTCTTTTCGGCTCACAATTTGACTTGACCGTGCCGCACATGTTAAATT
CCGACATAAGTTTATACGTCATAACTCTGAAAAGATAGATTTTAGATTTT
AGCATAATATTGTACTCCTGAAATAGAGTGAAAAAATAGGCTATTATGGA
AGAAAATGAAAGAATTCTTTTGATAATGGGGATCTTTAAATAAAAGTAAA
ATAGAGGTACGTTAGAAAAAATCGGGGTGGGGTTATTTTAGGCCCCCAAG
AGAGAATTTCTCTATGGATTGAATAGACTAAAGAAGACAAATGACCATGT
CAACCTACATGTTTTTTTTTATAAGCAAGTGTCTGCCCCTATATCAGGCT
CGCATTATGCTTAGCATTCTATTGTTCTCAAACAATGGAGCCATTGTTAC
GGTGCCAAAAACTGAGCCTGCGTATGCTTATAAACGTTATGCTTATAAAA
GAAAAAACATGTATCAACTTTGGTTCCAACTTCATAATAACACATTTTTA
GTTTTGGTAAACCTCATTAAAAGATACTTATATCCCCAGAAAGGAAATTT
ATTCAGCCTAATCCTACTAATCAATTGTCAGCCTCGAATCTAGAGTAAAC
TTAAAAAAATGTTACAAATACTCTACTATTTTTGACCAGCGTCAACCTCT
TTGTAATCTTACCTTAGCATGGAGTTCTTAGTGGCTTCTTTGCAATCTTT
TCCACCTATGTACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042318-exon-sc0003344-1575043694:12361..12460 | TCONS_00042318-exon-sc0003344-1575043694:12361..12460 | Clytia hemisphaerica | exon |
| TCONS_00042318-exon-sc0003344-1575043694:9995..11913 | TCONS_00042318-exon-sc0003344-1575043694:9995..11913 | Clytia hemisphaerica | exon |
| TCONS_00042318-exon-sc0003344-1510915933:12361..12460 | TCONS_00042318-exon-sc0003344-1510915933:12361..12460 | Clytia hemisphaerica | exon |
| TCONS_00042318-exon-sc0003344-1510915933:9995..11913 | TCONS_00042318-exon-sc0003344-1510915933:9995..11913 | Clytia hemisphaerica | exon |
| TCONS_00042318-exon-sc0003344-1491911889:12361..12460 | TCONS_00042318-exon-sc0003344-1491911889:12361..12460 | Clytia hemisphaerica | exon |
| TCONS_00042318-exon-sc0003344-1491911889:9995..11913 | TCONS_00042318-exon-sc0003344-1491911889:9995..11913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003344 | supercontig | sc0003344:9995..12460 - |
Blast
The following BLAST results are available for this feature:
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