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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042317 ID=TCONS_00042317|Name=TCONS_00042317|organism=Clytia hemisphaerica|type=transcript|length=1311bp
CTCAGATCGAATCATTGAAGTACATAGGTGgaaaagattgcaaagaagcC
ACTAAGAACTCCATGCTAAGAGTTATGACGTATAAACTTATGTCGGAATT
TAACATGTGCGGCACGGTCAAGTCAAATTGTGAGCCGAAAAGAAGATTTA
AAgacacaaaagttttccaagcaGTTCGCAAAGCAGTCGTAGACTCTGGT
AAGGGGACCGAGGATGACGTTTACAATGCAATGATAGATGTGTTGAAATT
TGCTCCTGATAAACATGGTGGATCAGGCAGGAAAAGAAAAAGCCCACCAC
CACAACACAGACCATCACCATCTCAGAATGAAGTCAGCTTGCCATTTCAA
GATCAAGTCAGTCCACCCCTACCAAAACGATTTAAAATGTTCGATGACGA
CAGTGACAGTGAAAGTGACTAgactaaaatagaaatttttctttttcaag
catcgtttatattttatatattttttagccTCCGTTTTTTTCAACTTAAC
ATTGTAAGTGTTGTAGCCTAATTTTGAATTCACAAGCGTCATTAACCAAA
TATCAACttcgcttgtttttatttgagaggaCTCAAATtctaagattttt
ttaatttttactgTTAACCTGTTACCGCTTGTGTCTTTTTAATCCACGAG
Acactcaaaaattaaaaaagtctgtcaaaagattaacttaaaacattttc
ttttcatcgtttttaaaatgtatatattaCCAGGCTGGTCTTCTCAGTCG
TATTTTTAGTCAaacgtttttattaaaaatgtaaatataacATGCTGGTC
CGTTCTGTCATCGAGTAAATATATATTACACTTGATTTTGTGCAGGCAAA
CCAGTgtatattcttgatatgcgcaagtcatttttctaacagaaacaccc
gaaaaaagccgggatttgatcTGTTactaaaattagaaaaacagaggtca
aAACCCGGCtttttcgggtgcttccgttaggaaaaatgacgtcatcttga
cttacgcatatcaaaaATACTAGTATGTaacctgaaaaaagaaaatattt
ttgaacatgAAAAGATACCGTTTTCTAGTTTGCTCCGCCATTTTGGAACA
AGTAACAGATCTGAGTACAGTTGTAATATCGGTTTTTCATAACTAGACAT
AAAACCATATAATAACGTTTTCACAACATTATTTCGGCAACGTTTATTTC
ACGTCATAATCTTAACGTCAAAAAAACTCTCATTTCCTAACTTAAGGGCA
ACGTTGGTACAACTTAACAGAGTAACTTTATTCCAACGTTAATTCAACgt
ttgtgtgccag Run BLAST on NCBI protein sequence of TCONS_00042317-protein >TCONS_00042317-protein ID=TCONS_00042317-protein|Name=TCONS_00042317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
QIESLKYIGGKDCKEATKNSMLRVMTYKLMSEFNMCGTVKSNCEPKRRFK
DTKVFQAVRKAVVDSGKGTEDDVYNAMIDVLKFAPDKHGGSGRKRKSPPP
QHRPSPSQNEVSLPFQDQVSPPLPKRFKMFDDDSDSESD Run BLAST on NCBI transcript from alignment at sc0003344:9979..12193+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042317 ID=TCONS_00042317|Name=TCONS_00042317|organism=Clytia hemisphaerica|type=transcript|length=2215bp|location=Sequence derived from alignment at sc0003344:9979..12193+ (Clytia hemisphaerica)
CTCAGATCGAATCATTGAAGTACATAGGTGgaaaagattgcaaagaagcC
ACTAAGAACTCCATGCTAAGGTAAGATTACAAAGAGGTTGACGCTGGTCA
AAAATAGTAGAGtatttgtaacatttttttaagtttacTCTAGATTCGAG
GCTGACAATTGATTAGTAGGATTAGGCTGAATAAATTTCCTTTCTGGGGA
TATAAGTATCTTTTAATGAGGTTTACCAAAACTAAAAATGTGTTATTATG
AAGTTGGAACCAAAgttgatacatgttttttcttttataagcataacgtt
tataagcatacgcaggctcagtttttggcaCCGTAACAATGGCTccattg
tttgagaacaatagaatgctaagcataatgcgagcctgatataggggcag
acacttgcttataaaaaaaaacatgtaggttGACATGGTCATTTGTCTTC
TTTAGTCTATTCAATCCATAGAGAAATTCTCTCTTGGGGGCCTAAAATAA
CCCCACCCCGATTTTTTCTAACGTACCtctattttacttttatttaaaga
tCCCCATTATCAAAagaattctttcattttcttccaTAATAGCCTATTTT
TTCACTCTATTTCAGGAGTACAATATTAtgctaaaatctaaaatctatCT
TTTCAGAGTTATGACGTATAAACTTATGTCGGAATTTAACATGTGCGGCA
CGGTCAAGTCAAATTGTGAGCCGAAAAGAAGATTTAAAgacacaaaagtt
ttccaagcaGTTCGCAGTGAGTACATTTTAATCTTGGTTATAGTTTTCCA
GGAAATAATGCCGGGTTTGATTGATTGTACTGTCACTTTACAAAATATCT
CGAGGGATATAAAAGTCAAAACAtggaatgggctcttccagaaaatgttc
gtacatagggggtggaggatatattgtccggggggtagtgaaaaatcatc
GAAATTTCCCTTGTCCGGGGGTGTAGCTCTGTCTGGAGGTAAACCTCGAA
ttggagagcgtcaactgtagtatGCTTTTATCTATGCTTCGTTTTGTCTC
AATTCTTCATGTGCTGTTTACATTTGATTTATAGAAGCAGTCGTAGACTC
TGGTAAGGGGACCGAGGATGACGTTTACAATGCAATGATAGATGTGTTGA
AATTTGCTCCTGATAAACATGGTGGATCAGGCAGGAAAAGAAAAAGCCCA
CCACCACAACACAGACCATCACCATCTCAGAATGAAGTCAGCTTGCCATT
TCAAGATCAAGTCAGTCCACCCCTACCAAAACGATTTAAAATGTTCGATG
ACGACAGTGACAGTGAAAGTGACTAgactaaaatagaaatttttcttttt
caagcatcgtttatattttatatattttttagccTCCGTTTTTTTCAACT
TAACATTGTAAGTGTTGTAGCCTAATTTTGAATTCACAAGCGTCATTAAC
CAAATATCAACttcgcttgtttttatttgagaggaCTCAAATtctaagat
ttttttaatttttactgTTAACCTGTTACCGCTTGTGTCTTTTTAATCCA
CGAGAcactcaaaaattaaaaaagtctgtcaaaagattaacttaaaacat
tttcttttcatcgtttttaaaatgtatatattaCCAGGCTGGTCTTCTCA
GTCGTATTTTTAGTCAaacgtttttattaaaaatgtaaatataacATGCT
GGTCCGTTCTGTCATCGAGTAAATATATATTACACTTGATTTTGTGCAGG
CAAACCAGTgtatattcttgatatgcgcaagtcatttttctaacagaaac
acccgaaaaaagccgggatttgatcTGTTactaaaattagaaaaacagag
gtcaaAACCCGGCtttttcgggtgcttccgttaggaaaaatgacgtcatc
ttgacttacgcatatcaaaaATACTAGTATGTaacctgaaaaaagaaaat
atttttgaacatgAAAAGATACCGTTTTCTAGTTTGCTCCGCCATTTTGG
AACAAGTAACAGATCTGAGTACAGTTGTAATATCGGTTTTTCATAACTAG
ACATAAAACCATATAATAACGTTTTCACAACATTATTTCGGCAACGTTTA
TTTCACGTCATAATCTTAACGTCAAAAAAACTCTCATTTCCTAACTTAAG
GGCAACGTTGGTACAACTTAACAGAGTAACTTTATTCCAACGTTAATTCA
ACgtttgtgtgccag Coding sequence (CDS) from alignment at sc0003344:9979..12193+ >TCONS_00042317 ID=TCONS_00042317|Name=TCONS_00042317|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0003344:9979..12193+ (Clytia hemisphaerica)
CAGATCGAATCATTGAAGTACATAGGTGgaaaagattgcaaagaagcCAC
TAAGAACTCCATGCTAAGAGTTATGACGTATAAACTTATGTCGGAATTTA
ACATGTGCGGCACGGTCAAGTCAAATTGTGAGCCGAAAAGAAGATTTAAA
gacacaaaagttttccaagcaGTTCGCAAAGCAGTCGTAGACTCTGGTAA
GGGGACCGAGGATGACGTTTACAATGCAATGATAGATGTGTTGAAATTTG
CTCCTGATAAACATGGTGGATCAGGCAGGAAAAGAAAAAGCCCACCACCA
CAACACAGACCATCACCATCTCAGAATGAAGTCAGCTTGCCATTTCAAGA
TCAAGTCAGTCCACCCCTACCAAAACGATTTAAAATGTTCGATGACGACA
GTGACAGTGAAAGTGACTAgCAGATCGAATCATTGAAGTACATAGGTGga
aaagattgcaaagaagcCACTAAGAACTCCATGCTAAGAGTTATGACGTA
TAAACTTATGTCGGAATTTAACATGTGCGGCACGGTCAAGTCAAATTGTG
AGCCGAAAAGAAGATTTAAAgacacaaaagttttccaagcaGTTCGCAAA
GCAGTCGTAGACTCTGGTAAGGGGACCGAGGATGACGTTTACAATGCAAT
GATAGATGTGTTGAAATTTGCTCCTGATAAACATGGTGGATCAGGCAGGA
AAAGAAAAAGCCCACCACCACAACACAGACCATCACCATCTCAGAATGAA
GTCAGCTTGCCATTTCAAGATCAAGTCAGTCCACCCCTACCAAAACGATT
TAAAATGTTCGATGACGACAGTGACAGTGAAAGTGACTAgCAGATCGAAT
CATTGAAGTACATAGGTGgaaaagattgcaaagaagcCACTAAGAACTCC
ATGCTAAGAGTTATGACGTATAAACTTATGTCGGAATTTAACATGTGCGG
CACGGTCAAGTCAAATTGTGAGCCGAAAAGAAGATTTAAAgacacaaaag
ttttccaagcaGTTCGCAAAGCAGTCGTAGACTCTGGTAAGGGGACCGAG
GATGACGTTTACAATGCAATGATAGATGTGTTGAAATTTGCTCCTGATAA
ACATGGTGGATCAGGCAGGAAAAGAAAAAGCCCACCACCACAACACAGAC
CATCACCATCTCAGAATGAAGTCAGCTTGCCATTTCAAGATCAAGTCAGT
CCACCCCTACCAAAACGATTTAAAATGTTCGATGACGACAGTGACAGTGA
AAGTGACTAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042317-exon-sc0003344-1491911889:9979..10048 | TCONS_00042317-exon-sc0003344-1491911889:9979..10048 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1510915933:9979..10048 | TCONS_00042317-exon-sc0003344-1510915933:9979..10048 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1575043694:9979..10048 | TCONS_00042317-exon-sc0003344-1575043694:9979..10048 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1491911889:10635..10744 | TCONS_00042317-exon-sc0003344-1491911889:10635..10744 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1510915933:10635..10744 | TCONS_00042317-exon-sc0003344-1510915933:10635..10744 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1575043694:10635..10744 | TCONS_00042317-exon-sc0003344-1575043694:10635..10744 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1491911889:11063..12193 | TCONS_00042317-exon-sc0003344-1491911889:11063..12193 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1510915933:11063..12193 | TCONS_00042317-exon-sc0003344-1510915933:11063..12193 | Clytia hemisphaerica | exon |
| TCONS_00042317-exon-sc0003344-1575043694:11063..12193 | TCONS_00042317-exon-sc0003344-1575043694:11063..12193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003344 | supercontig | sc0003344:9979..12193 + |
Blast
The following BLAST results are available for this feature:
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