TCONS_00042315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042315
Unique NameTCONS_00042315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042315 ID=TCONS_00042315|Name=TCONS_00042315|organism=Clytia hemisphaerica|type=transcript|length=649bp
agaccaaaaatgacaaaaatggcATTCCAGTAGATTTCAGTGGGGTTTTT
AGCCATTTGTTGGTCTGTCTGTTTACTACGGCCTCCAAACAGTAGCAAAT
ATCATTAAAATTCTTTCTCCCGTGACCAATCGAACCTACATTTCCACCAC
AGCTTGAAATCAGTGAAACAAGTGTCTCAAAATGAACGGCATCTGCTCCT
ATTTTCAAATCGGCCACTGCACAGCGGAAAATATTTGCTGTGATTGCGTG
GGATTATTGTCTACGAGCATTTTCTTCATTGTAAGCTTGGACTGCTTTTT
TATGTAAGACGGATCCTTCTTCGATTAAGCATATGTGTTCTATGATTCTG
TGTTTCTGGCGGTACCAAAATTCATTTTCTCCAATAATTAGCTTGGAGCA
AGAGTCTCCTCTGTAACTTATTCCTATCGAGAAACTATTACGTTCTGAAG
AAGACAAGAATTCTTGTGCCTTTGTTGGTGTAAGACTTGCTAGCGTGGGT
TTGCTTTTAACATGAAAATTGAAGCATGGCTTACATCTTAAAATGCCTGT
TCTTCATCATAAAACCAATCTAAAACATCACAACTGCTATTTAATTCGTT
AATATTAGAACAATTCTTTATCGAATCTAGCAAGACTTTTTCCTTTCCA
Run BLAST on NCBI

transcript from alignment at sc0003343:11217..11865

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042315 ID=TCONS_00042315|Name=TCONS_00042315|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0003343:11217..11865 (Clytia hemisphaerica)
TGGAAAGGAAAAAGTCTTGCTAGATTCGATAAAGAATTGTTCTAATATTA
ACGAATTAAATAGCAGTTGTGATGTTTTAGATTGGTTTTATGATGAAGAA
CAGGCATTTTAAGATGTAAGCCATGCTTCAATTTTCATGTTAAAAGCAAA
CCCACGCTAGCAAGTCTTACACCAACAAAGGCACAAGAATTCTTGTCTTC
TTCAGAACGTAATAGTTTCTCGATAGGAATAAGTTACAGAGGAGACTCTT
GCTCCAAGCTAATTATTGGAGAAAATGAATTTTGGTACCGCCAGAAACAC
AGAATCATAGAACACATATGCTTAATCGAAGAAGGATCCGTCTTACATAA
AAAAGCAGTCCAAGCTTACAATGAAGAAAATGCTCGTAGACAATAATCCC
ACGCAATCACAGCAAATATTTTCCGCTGTGCAGTGGCCGATTTGAAAATA
GGAGCAGATGCCGTTCATTTTGAGACACTTGTTTCACTGATTTCAAGCTG
TGGTGGAAATGTAGGTTCGATTGGTCACGGGAGAAAGAATTTTAATGATA
TTTGCTACTGTTTGGAGGCCGTAGTAAACAGACAGACCAACAAATGGCTA
AAAACCCCACTGAAATCTACTGGAATgccatttttgtcatttttggtct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026171XLOC_026171Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042315-exon-sc0003343-1491911889:11217..11865TCONS_00042315-exon-sc0003343-1491911889:11217..11865Clytia hemisphaericaexon
TCONS_00042315-exon-sc0003343-1510915933:11217..11865TCONS_00042315-exon-sc0003343-1510915933:11217..11865Clytia hemisphaericaexon
TCONS_00042315-exon-sc0003343-1575043694:11217..11865TCONS_00042315-exon-sc0003343-1575043694:11217..11865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003343supercontigsc0003343:11217..11865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.157256	0	0	0.108736	0.0859244	0.207328	0.485246	0.271786	0.0841626	0	0.2148	0.214501	0.445523	0.732561	0.638747	1.21059	1.92327	0.942841	1.34538	0.857547	1.02669	0	0.840506	0	0	0.77393	0.943953	0.805449	0.911806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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