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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042314 ID=TCONS_00042314|Name=TCONS_00042314|organism=Clytia hemisphaerica|type=transcript|length=1042bp
tctttttattatgaTTTTCTCTAAataaggaaagaaagaaaaacaatgtt
AATTGATAAAAACTAAAAGAGGAAATATAAAATCTTAATCAGCGTTTTCA
TTATAAAAAGTTCATTGGACATCTAAGCGTTCAGCCAACACTTTTTTAAC
TCTATAATTCCATTGTTCATTCATCATTAACTCCTTCTTAGACATTTGCT
TAAAGGTAGCTCTTTTCTCATTCTCCATTTTCTCTAGATAAAGTAAATGN
CTTAAAGGTAGCTCTTTTCTCATTCTCCATTTTCTCTAGATAAAGTAAAT
GAGCTTTTTCTTCGTCAACTTTCCCCATTAACTTCTCGAAAATATATTCG
ATTCTTTCGGTTACATCCATCATCATACATTCATGATCCCTTTGACTTGG
ATATGATTCTCTACATCCCTCGCACTCCTCTTGTGAACAGCCATAAAACC
ATGAAAGCAGCAGACTTGCATATATTGGAATCATCTCATGCTGATATTCA
TTGAGAGTTACCTCATCGATGCTTTTCGTTGATTCATCGTGTGGAACTTT
TACTTCTGTTTCTACTTCTGCTTCTACTTCTACTTCTGAATCATTATtca
atttaaataaaatttcttgaaaCCTCTTGATCTCGTTTATCAAACTTGGT
AACATCGTATAATGAACCATTACTTTGTTTTTCGTTTCTGGGTTTACGAT
AGATGGTTGAGAAAAACataagaaaatgttttgttttatcTTCAGTTGCA
CTATGTAACGATAAATCAATatccatatattttttattcatagTTCTCCA
ATGTCTAATCCAATCGTCAAATAAGTGTTCACGTCTTTGATGTTTTGTTA
ATTTCCTCGGTGCCATTGGATGTTCTAGCTTTCTTTTTCTAGTCGTTTta
ggtgtttttttcattttactcTCAACCATTTTGATAAGAAGCAAAAGAAG
GTTTGAAGATAAATCATCgtatatttttagctttaaataCTAATCCATCc
attattcttaatttattataattgtttcttctttaatatttt Run BLAST on NCBI protein sequence of TCONS_00042314-protein >TCONS_00042314-protein ID=TCONS_00042314-protein|Name=TCONS_00042314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MVHYTMLPSLINEIKRFQEILFKLNNDSEVEVEAEVETEVKVPHDESTKS
IDEVTLNEYQHEMIPIYASLLLSWFYGCSQEECEGCRESYPSQRDHECMM
MDVTERIEYIFEKLMGKVDEEKAHLLYLEKMENEKRATFKXFTLSRENGE Run BLAST on NCBI transcript from alignment at sc0003343:7648..8689 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042314 ID=TCONS_00042314|Name=TCONS_00042314|organism=Clytia hemisphaerica|type=transcript|length=1042bp|location=Sequence derived from alignment at sc0003343:7648..8689 (Clytia hemisphaerica)
aaaatattaaagaagaaacaattataataaattaagaataatgGATGGAT
TAGtatttaaagctaaaaatatacGATGATTTATCTTCAAACCTTCTTTT
GCTTCTTATCAAAATGGTTGAgagtaaaatgaaaaaaacacctaAAACGA
CTAGAAAAAGAAAGCTAGAACATCCAATGGCACCGAGGAAATTAACAAAA
CATCAAAGACGTGAACACTTATTTGACGATTGGATTAGACATTGGAGAAc
tatgaataaaaaatatatggatATTGATTTATCGTTACATAGTGCAACTG
AAgataaaacaaaacattttcttatGTTTTTCTCAACCATCTATCGTAAA
CCCAGAAACGAAAAACAAAGTAATGGTTCATTATACGATGTTACCAAGTT
TGATAAACGAGATCAAGAGGtttcaagaaattttatttaaattgaATAAT
GATTCAGAAGTAGAAGTAGAAGCAGAAGTAGAAACAGAAGTAAAAGTTCC
ACACGATGAATCAACGAAAAGCATCGATGAGGTAACTCTCAATGAATATC
AGCATGAGATGATTCCAATATATGCAAGTCTGCTGCTTTCATGGTTTTAT
GGCTGTTCACAAGAGGAGTGCGAGGGATGTAGAGAATCATATCCAAGTCA
AAGGGATCATGAATGTATGATGATGGATGTAACCGAAAGAATCGAATATA
TTTTCGAGAAGTTAATGGGGAAAGTTGACGAAGAAAAAGCTCATTTACTT
TATCTAGAGAAAATGGAGAATGAGAAAAGAGCTACCTTTAAGNCATTTAC
TTTATCTAGAGAAAATGGAGAATGAGAAAAGAGCTACCTTTAAGCAAATG
TCTAAGAAGGAGTTAATGATGAATGAACAATGGAATTATAGAGTTAAAAA
AGTGTTGGCTGAACGCTTAGATGTCCAATGAACTTTTTATAATGAAAACG
CTGATTAAGATTTTATATTTCCTCTTTTAGTTTTTATCAATTaacattgt
ttttctttctttccttatTTAGAGAAAAtcataataaaaaga Coding sequence (CDS) from alignment at sc0003343:7648..8689 >TCONS_00042314 ID=TCONS_00042314|Name=TCONS_00042314|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0003343:7648..8689 (Clytia hemisphaerica)
ATGGTTCATTATACGATGTTACCAAGTTTGATAAACGAGATCAAGAGGtt
tcaagaaattttatttaaattgaATAATGATTCAGAAGTAGAAGTAGAAG
CAGAAGTAGAAACAGAAGTAAAAGTTCCACACGATGAATCAACGAAAAGC
ATCGATGAGGTAACTCTCAATGAATATCAGCATGAGATGATTCCAATATA
TGCAAGTCTGCTGCTTTCATGGTTTTATGGCTGTTCACAAGAGGAGTGCG
AGGGATGTAGAGAATCATATCCAAGTCAAAGGGATCATGAATGTATGATG
ATGGATGTAACCGAAAGAATCGAATATATTTTCGAGAAGTTAATGGGGAA
AGTTGACGAAGAAAAAGCTCATTTACTTTATCTAGAGAAAATGGAGAATG
AGAAAAGAGCTACCTTTAAGNCATTTACTTTATCTAGAGAAAATGGAGAA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042314-exon-sc0003343-1491911889:7648..8689 | TCONS_00042314-exon-sc0003343-1491911889:7648..8689 | Clytia hemisphaerica | exon |
| TCONS_00042314-exon-sc0003343-1510915933:7648..8689 | TCONS_00042314-exon-sc0003343-1510915933:7648..8689 | Clytia hemisphaerica | exon |
| TCONS_00042314-exon-sc0003343-1575043694:7648..8689 | TCONS_00042314-exon-sc0003343-1575043694:7648..8689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003343 | supercontig | sc0003343:7648..8689 . |
Blast
The following BLAST results are available for this feature:
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