TCONS_00042313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042313
Unique NameTCONS_00042313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042313 ID=TCONS_00042313|Name=TCONS_00042313|organism=Clytia hemisphaerica|type=transcript|length=561bp
TAAACCTTTAATCGTATTAATGCAGAATATTTACCATGATATGAATAATC
GTTTAGGATTGAGTATAGGGATCAGTGCAAGGATACGAGAAAtctatttg
aaatataaatttaaGACTCTAAAGCTTTGATCTTTACTTTCagagaaaat
aacaaaactAAAAAGATTATGACAAGGATAAAACCTGTCAAGTGGCATCG
TCGCTCAATGATGTATTTAGGAGTTGAGTTGATGATAGACGATATTAAAA
ATGGAGAAGGATGGGAAGATTTAACGGACGAGCAGAAGTTTTGGTTATTG
TTTGATAGAATAGACTTTGCGTTGCTAAATAAACTCTCCTTGGAAACTCA
TCTCTATAAAGATCAATATTCTTCAAAACAAGATTTATTGGAAGATAAAG
GTTTTATTGGTTGCatgaaaagtattttttatcaGAGAGATGTTGAAACC
AAATcacaattattttttcattattataGAATATATTTGAATTATTTGAA
ACTTAATGAATTAGACGAATtattgaaatcaaagaaaatatatcATTCAT
GTTGATTGGAA
Run BLAST on NCBI

protein sequence of TCONS_00042313-protein

>TCONS_00042313-protein ID=TCONS_00042313-protein|Name=TCONS_00042313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MTRIKPVKWHRRSMMYLGVELMIDDIKNGEGWEDLTDEQKFWLLFDRIDF
ALLNKLSLETHLYKDQYSSKQDLLEDKGFIGCMKSIFYQRDVETKSQLFF
HYYRIYLNYLKLNELDELLKSKKIYHSC
Run BLAST on NCBI

transcript from alignment at sc0003343:6599..7159

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042313 ID=TCONS_00042313|Name=TCONS_00042313|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at sc0003343:6599..7159 (Clytia hemisphaerica)
TTCCAATCAACATGAATgatatattttctttgatttcaataATTCGTCTA
ATTCATTAAGTTTCAAATAATTCAAATATATTCtataataatgaaaaaat
aattgtgATTTGGTTTCAACATCTCTCtgataaaaaatacttttcatGCA
ACCAATAAAACCTTTATCTTCCAATAAATCTTGTTTTGAAGAATATTGAT
CTTTATAGAGATGAGTTTCCAAGGAGAGTTTATTTAGCAACGCAAAGTCT
ATTCTATCAAACAATAACCAAAACTTCTGCTCGTCCGTTAAATCTTCCCA
TCCTTCTCCATTTTTAATATCGTCTATCATCAACTCAACTCCTAAATACA
TCATTGAGCGACGATGCCACTTGACAGGTTTTATCCTTGTCATAATCTTT
TTagttttgttattttctctGAAAGTAAAGATCAAAGCTTTAGAGTCtta
aatttatatttcaaatagaTTTCTCGTATCCTTGCACTGATCCCTATACT
CAATCCTAAACGATTATTCATATCATGGTAAATATTCTGCATTAATACGA
TTAAAGGTTTA

Coding sequence (CDS) from alignment at sc0003343:6599..7159

>TCONS_00042313 ID=TCONS_00042313|Name=TCONS_00042313|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0003343:6599..7159 (Clytia hemisphaerica)
TCAACATGAATgatatattttctttgatttcaataATTCGTCTAATTCAT
TAAGTTTCAAATAATTCAAATATATTCtataataatgaaaaaataattgt
gATTTGGTTTCAACATCTCTCtgataaaaaatacttttcatGCAACCAAT
AAAACCTTTATCTTCCAATAAATCTTGTTTTGAAGAATATTGATCTTTAT
AGAGATGAGTTTCCAAGGAGAGTTTATTTAGCAACGCAAAGTCTATTCTA
TCAAACAATAACCAAAACTTCTGCTCGTCCGTTAAATCTTCCCATCCTTC
TCCATTTTTAATATCGTCTATCATCAACTCAACTCCTAAATACATCATTG
AGCGACGATGCCACTTGACAGGTTTTATCCTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026169XLOC_026169Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042313-proteinTCONS_00042313-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042313-exon-sc0003343-1491911889:6599..7159TCONS_00042313-exon-sc0003343-1491911889:6599..7159Clytia hemisphaericaexon
TCONS_00042313-exon-sc0003343-1510915933:6599..7159TCONS_00042313-exon-sc0003343-1510915933:6599..7159Clytia hemisphaericaexon
TCONS_00042313-exon-sc0003343-1575043694:6599..7159TCONS_00042313-exon-sc0003343-1575043694:6599..7159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003343supercontigsc0003343:6599..7159 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.08736	0.644433	0.777481	0.363934	0.424665	1.05203	0	0.40275	0	0	1.20186	0.798434	1.74022	1.16327	0.964269	0.784807	1.16938	1.56856	0.231125	0.63038	0.108213	0	0.138202	0.294985	0.223736	0.455903
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top