TCONS_00042310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042310
Unique NameTCONS_00042310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042310 ID=TCONS_00042310|Name=TCONS_00042310|organism=Clytia hemisphaerica|type=transcript|length=743bp
CTCCCTTTCACTTTTAGACTCGATGCTAAAACTTGGCAAAAAATCGGGAA
AatacttatagaataaAAGTGCAAAATCGTGATTGCACATCTTTTTTCGA
TCTATCGTCAATTAAGAATGAAATATGGACTTGTTTTTTTTGCCCACCCG
GTAGATGAACCAATTGAGGAGCAGCAGCATGACAACATTCAAGAACAAGC
CAATAGGAAAGGCCAGTTTTCCTCAGCACTTTACCCTGATTCCACAGTAA
CCCTTGGTGCTGCTATAACCATGGTGATtgcattttcacaaaaattcaag
cTTCCTGGTGTTGCTCTTTCTTCATTAGTTCTTCTTTTAAACATCCTTTT
ACCAGCAAACCATATTTTTCCGAAATCCCTGTTTATCCTGAAAAAACTAC
TTGCGTCACTTTCACCTGATGTTAAGACGCACTATTTTTGCAAAGAGTGT
TTGATGAAAATTGATAAGGCTGACAAAGTTTGTTCAAATACTTCTTGCTG
TCAGTCAAGCAACTCTGGAAAACCTATTGCCAAATCGTATTTTATGGAGT
TCGACCtcaaaagtcaaattaaatcaattttttctcGTACTGGCATGCTT
CAGAAATTAAAGCACAGGTTTACTCGTACCTCTTCATCTCCATCAGACAT
TTATGACTTTTCTTTGTATAAATCTTATTCATCATTTTTGAACAATCCTT
TCAATATTTCGTTTATGTGGAATACGGATGGTGTACCGCTGNN
Run BLAST on NCBI

protein sequence of TCONS_00042310-protein

>TCONS_00042310-protein ID=TCONS_00042310-protein|Name=TCONS_00042310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MKYGLVFFAHPVDEPIEEQQHDNIQEQANRKGQFSSALYPDSTVTLGAAI
TMVIAFSQKFKLPGVALSSLVLLLNILLPANHIFPKSLFILKKLLASLSP
DVKTHYFCKECLMKIDKADKVCSNTSCCQSSNSGKPIAKSYFMEFDLKSQ
IKSIFSRTGMLQKLKHRFTRTSSSPSDIYDFSLYKSYSSFLNNPFNISFM
WNTDGVPL
Run BLAST on NCBI

transcript from alignment at sc0003343:2678..3420

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042310 ID=TCONS_00042310|Name=TCONS_00042310|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0003343:2678..3420 (Clytia hemisphaerica)
NNCAGCGGTACACCATCCGTATTCCACATAAACGAAATATTGAAAGGATT
GTTCAAAAATGATGAATAAGATTTATACAAAGAAAAGTCATAAATGTCTG
ATGGAGATGAAGAGGTACGAGTAAACCTGTGCTTTAATTTCTGAAGCATG
CCAGTACgagaaaaaattgatttaatttgacttttgaGGTCGAACTCCAT
AAAATACGATTTGGCAATAGGTTTTCCAGAGTTGCTTGACTGACAGCAAG
AAGTATTTGAACAAACTTTGTCAGCCTTATCAATTTTCATCAAACACTCT
TTGCAAAAATAGTGCGTCTTAACATCAGGTGAAAGTGACGCAAGTAGTTT
TTTCAGGATAAACAGGGATTTCGGAAAAATATGGTTTGCTGGTAAAAGGA
TGTTTAAAAGAAGAACTAATGAAGAAAGAGCAACACCAGGAAgcttgaat
ttttgtgaaaatgcaATCACCATGGTTATAGCAGCACCAAGGGTTACTGT
GGAATCAGGGTAAAGTGCTGAGGAAAACTGGCCTTTCCTATTGGCTTGTT
CTTGAATGTTGTCATGCTGCTGCTCCTCAATTGGTTCATCTACCGGGTGG
GCAAAAAAAACAAGTCCATATTTCATTCTTAATTGACGATAGATCGAAAA
AAGATGTGCAATCACGATTTTGCACTTttattctataagtatTTTCCCGA
TTTTTTGCCAAGTTTTAGCATCGAGTCTAAAAGTGAAAGGGAG

Coding sequence (CDS) from alignment at sc0003343:2678..3420

>TCONS_00042310 ID=TCONS_00042310|Name=TCONS_00042310|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0003343:2678..3420 (Clytia hemisphaerica)
CAGCGGTACACCATCCGTATTCCACATAAACGAAATATTGAAAGGATTGT
TCAAAAATGATGAATAAGATTTATACAAAGAAAAGTCATAAATGTCTGAT
GGAGATGAAGAGGTACGAGTAAACCTGTGCTTTAATTTCTGAAGCATGCC
AGTACgagaaaaaattgatttaatttgacttttgaGGTCGAACTCCATAA
AATACGATTTGGCAATAGGTTTTCCAGAGTTGCTTGACTGACAGCAAGAA
GTATTTGAACAAACTTTGTCAGCCTTATCAATTTTCATCAAACACTCTTT
GCAAAAATAGTGCGTCTTAACATCAGGTGAAAGTGACGCAAGTAGTTTTT
TCAGGATAAACAGGGATTTCGGAAAAATATGGTTTGCTGGTAAAAGGATG
TTTAAAAGAAGAACTAATGAAGAAAGAGCAACACCAGGAAgcttgaattt
ttgtgaaaatgcaATCACCATGGTTATAGCAGCACCAAGGGTTACTGTGG
AATCAGGGTAAAGTGCTGAGGAAAACTGGCCTTTCCTATTGGCTTGTTCT
TGAATGTTGTCATGCTGCTGCTCCTCAATTGGTTCATCTACCGGGTGGGC
AAAAAAAACAAGTCCATATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026166XLOC_026166Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042310-proteinTCONS_00042310-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042310-exon-sc0003343-1491911889:2678..3420TCONS_00042310-exon-sc0003343-1491911889:2678..3420Clytia hemisphaericaexon
TCONS_00042310-exon-sc0003343-1510915933:2678..3420TCONS_00042310-exon-sc0003343-1510915933:2678..3420Clytia hemisphaericaexon
TCONS_00042310-exon-sc0003343-1575043694:2678..3420TCONS_00042310-exon-sc0003343-1575043694:2678..3420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003343supercontigsc0003343:2678..3420 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.774447	0.628523	0.376121	0.651189	2.04602	1.4282	3.159	2.93635	2.79788	2.06976	4.95936	3.51099	3.5174	2.10409	1.86657	1.25712	2.20518	2.89806	2.20541	0.727305	3.92998	2.48777	1.35132	1.38053	3.08094	3.19877	1.94571	0.777789	0.442444	0.584908
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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