TCONS_00042309 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00042309
Unique Name	TCONS_00042309
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1286

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0003342:3747..8791+

transcript sequence

>TCONS_00042309 ID=TCONS_00042309|Name=TCONS_00042309|organism=Clytia hemisphaerica|type=transcript|length=1286bp
GTTCCAAGCTGTCTTAATTTGATTTAATAACACGGGGGTAACATAAAATG
TAAGCTATGATAGcaattggaaaattggaaaataatttcTACCATAACTT
TCACAATTTAGAGAACTACATAGTTCAAATGAGaactttttacaaaatca
tGAAAGTAGTAGAATATAAAATGACAGCGTCATCATGAAATTAAACTATA
TAGTAACCCCCGTCTTTACACGAAGTAAGATAATTTGCAAAATGGTAGCA
GAGTGGCGCGAATGTATTTCATTTCTAGTTGGTGGCGAAGTAAAACTTTC
AGTTTGCAAaagttaaagctattttaaatCTTAACCTAACATCGTGATCC
TTGACACAAATCACTGATTGACTATATGAAACGCTTTCAAAGAAACTGGA
GAAGATATTTTTGTGGTTATTTGAGCAAAAATGGACGATCCTCTTGATAA
AAACATTCAACAAGAACACTGAAAAAATCAAACATCTAAACTCGAAAACT
GACAAGCAAGACCAGTTTTCAAGCAATGACCTGGACATGAATTTGAATTc
aacaatatcaaaattgaagaaatcGattcAACAAGCTATCAACATCAATC
ATTGAGAAATTCACACAACAATTCAGGCAACTTTATCAGTACAGTTGGCA
GCTGCTTAATTGGCTGCAATTTGGTAGACCAGTAGCTCGAAGCTGAAACA
GTCAGATATCGTATGCAATAACAATGGatattgaaagaattttgaacATT
AGAAACCAACGTAATGATATACAATGATAAAACTGATGCTGGAGAAAATA
TAATGCTTATTTTCAATTGGTTGATAAAAGTATAGAAATAGACAGAAATA
GACAATTGAAAGAATCATCTGCTTTCAATGTAATCGCACGTCTTCAATGA
AGGAAATATTGCATACATACTTAATGGGTGTGCTCTTTCAAGTAAATTTC
TCAAAGTCTTTGAATATTTTCCATGGGCACCTTGGAAAGTGGACTTAAAT
TTCGATTCGATTgttcatttattaaatttggtctATTTAATCAGAGATTT
AATATAAAATGCTCAATAACCTTCTGAATAGTtcataaacataaaatatc
gaCCAAAGTTGAATTATTGTTTAAGGGTTGGTTGAACATTTTCAGGgaat
aaaaaattaagttcTAGGGGTCtaagaaagatgtttttttttttctacag
agagtactctcgggtacctaatagccatccccccccgctaattaattttt
cgaaaagtttccacccaggacattcttattccaacc

Run BLAST on NCBI

transcript from alignment at sc0003342:3747..8791+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00042309 ID=TCONS_00042309|Name=TCONS_00042309|organism=Clytia hemisphaerica|type=transcript|length=5045bp|location=Sequence derived from alignment at sc0003342:3747..8791+ (Clytia hemisphaerica)
GTTCCAAGCTGTCTTAATTTGATTTAATAACACGGGGGTAACATAAAATG
TAAGCTATGATAGcaattggaaaattggaaaataatttcTACCATAACTT
TCACAATTTAGAGAACTACATAGTTCAAATGAGaactttttacaaaatca
tGAAAGTAGTAGAATATAAAATGACAGCGTCATCATGAAATTAAACTATA
TAGTAACCCCCGTCTTTACACGAAGTAAGATAATTTGCAAAATGGTAGCA
GAGTGGCGCGAATGTATTTCATTTCTAGTTGGTGGCGAAGTAAAACTTTC
AGTTTGCAAaagttaaagctattttaaatCTTAACCTAACATCGTGATCC
TTGACACAAATCACTGATTGACTATATGAAACGCTTTCAAAGAAACTGGA
GAAGATATTTTTGTGGTTATTTGAGCAAAAATGGACGATCCTCTTGATAA
AAACATTCAACAAGAACACTGAAAAAATCAAACATCTAAACTCGAAAACT
GACAAGCAAGACCAGGCAtgtattttcaaacttttctactTTTCAACCCT
TatagggataatcagatggtttgggATATTTGGCATGTGGAATCTTTCTT
TTGTCCTGaacaaaacctcaaaatatttttgcctaaatattttccaaagt
tgagataagttacaagtttttgacttttagtaaAACAACGTAAGAACCGT
ATGAGaacccattttcagaaattttaaatcttGACTTTAGAATATAGTTA
GACAAAAGTTTGGGCGATTTTACTCAAAACCACAGGAGTTTTTTCAGGCA
gaaaatctcaaaccatctgattatccctttaaatgtCTCTGGATTTTTAA
ATATACATCACTTTCCGTGCCAATGATTAAAATGGTTAACAAGGTACACT
ATTTACATCTTTTTAAGAGTTGAAGtgcaatataattttttcaACTGATC
TTAAAGATTTGGTCTAAAACTTGTGTTAGCTTCACAGCTATCTGTAGGTA
GGTCTGCAGTGCAGCAGCTTAAGGAGGGGTTTAATTATTGGGTATATTTG
TgaattaagaaaattatttaccAGATGACAAACTGTATTTTCTGGGAAGT
AATTTTTGGTTAACCTTTGGTCACATTTTTATTACATTGATATTGTGTCA
GCAGTGTTGGGTATGCGACATATTGTGTGTTATCAatgaaatcaaatcaa
taatcaaTATGGATACTTGAtgaaaaatcgataaaaattgatgaaaaatc
cATTACGATTGATACTTGAAGGTACCTGATGAtgatcgattgttaatcga
caGAACCAATACCAAAAGTTGATCGATAGTAATTGATACCTCATCGATAA
AAATCGATTGCTCGTCAATATCAATTGATGCTAGTCAATAgctaattgat
ttttaaaaatgtattttatgTCAATTAGTTATTGATTATTGGTTCTAATC
GATATGTACCCTGATCATTTGAGTGCTTGCGTTGCTCATCAgagacattt
tcattaaaattataaattacTAAAAGTAATAAGTAATGATAAAAGTAAAC
AGGTAAACATAATTATAATATTATTAAAAGGATGAAACTTCAATGAATGC
ATGATACATTTTTAACTGTTCTGACTAGGCtgtttcttagatttttggga
AGGCTTGGTGATTTTTACTTAAACGATCCAAAAGATTTATTTCTCAAAAT
GAGGGGGTTGGATACAAGATTATGGGTGATGACGCGCTCCTCGAACTAAG
TTGAATTTTTTACTTCTTTCCAGTACatgatattttatatattttttcaa
agtatgcTTAGCTTCTTTACActttacttttcattttttatatgtTATGG
CTATATTAATATTTATagatatatttcaaaataaacagcTATGTGACAGG
CGTTTTTGCGAGTTACCTATATCTTGTCATTTCTCTAAAATGAAATTATC
TCTCGGGATTGATATGTCGTGACGCGCTCCTTCTTTCAAGGCGTTTTTGC
GAGCGGCAATACTTTTCCTTTGAGATAATTTATGCTTGATTAAAAAAGCA
AAACGGATCATTAGATAAACAGAAAGCTACAGACATTTAGCTACACCAAA
AGCCAAAGTTTCTTCTCAATATAGTTGACTGGTACTGTTTGCCAAAAAGT
ATAGTGTtgttgaagtttgcaaaaaccTTAAGCTGTAATGACTTTAAGGA
AATGCATTGAaagatgaaatgaaattgtgCATAACCCGGTATGAGGCACT
ATTTTTAAAAGTACTATCCAAAATGTGTCTTTACATACTGGGAAATTCTG
ATCAgacctttttttttcattccagTTTTCAAGCAATGACCTGGACATGA
ATTTGAATTcaacaatatcaaaattgaagaaatcGGTATGATTTTTATTG
TTCTTATGGGCAAAGTGCTAGGGTGTAGCTAGTTGAGACAAGTTATGAAA
GTCCTGCTGGTCTTTGTTTGTCAATTTCTTTGATATGCTGctggcaaaat
aacaaaaaaggcATCTCATCCATATAAGCCTTTACTCAAATCATATCATT
CAAAGGCAGTGTTcattcaacttgatttcaactttgaaactttcaacatg
caacaaaaagttaattcaaaatttccattaaGCTCCAGTCTGGAAcaaaa
aatctgagaaaaacaaagcttgataaaagcagctattaaaatgattttga
acattttgaattcttttgagcacttttttttataaattaacccatgttcg
ttagtGCGTGTgtttgttaccagcttttctcgagattggctcattagttt
tttctgatttttggcacaaaggtacATGACCatacatagtgtcctcctgg
gttggttccccccgctaaaaatcaaaatttttctccattcccccctcttt
tatttcccccaccatatttcaaaattttcggttcccccctcttttttgaa
ttcccccagctatttgaagattttgcggttccccatatggttaacataaa
aatgccttaaatcaagtttgaaatNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGATcacct
tgagatcagtgaagttcccccagtcaaaatttcctaaatttatggttttc
ccccctctttattttcccccagcaaatttcaaattttNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccataaacccttgaa
tgtgaccgggcaaatttgggtaaaaaaaacggctaaagagaagtaaaaaC
AAACTATTGACATTTTCTCATTGGCTGATAAATGTAGTAGCTGATTGTAA
CAAaagttgtcaatttttttctgatgcAAAGTTGAAATTGAAACTTTCGA
AATTAATAAAACCAATAATTCTCAAcatcagttgagctagaatttGGAAA
ACTTTGGGACAGGCTGGAGactcaaaaatggtcagatttggctgaaattt
ggcacacttgattcttgggcaaatccctggggtggttatttaattaattt
aatttaattaacaATGCTCGAGTCAATTGGAAAtaatttgagtttgaaat
aattttcccCTCATCTTCTACACTGAGATAGGTAATTTTTTGCCATTTCT
GttgattttaaaatattttcttgattttctttgttaaacatttttgagAT
TCAAAATTAGACAGCATTACCCTGCAGCTGtgtaccccctggaaaaagtg
tatttttggACAACAACGGATTTGCAAAGGCTTTCGGAAATATTACCATT
TAAATTTTCAGTTCTTAAATTATGATTGTCCGATATCAGctttcaaatca
atcaaaatatcTTACAGATTAAGTGTTCATTAATGAAAATAGTTTTATct
ttagaaattatattgattCTTTTACTGGATAGTGCTGTAAAAAGAGACCA
CctaagtttttcaattttttgggtTGTGTCATTAATTGCAAGGATGAACC
TCTTCAAAAGCTGtatctatttttttcttttcagattcAACAAGCTATCA
ACATCAATCATTGAGAAATTCACACAACAATTCAGGCAACTTTATCAGTA
CAGTTGGCAGCTGCTTAATTGGCTGCAATTTGGTAGACCAGTAGCTCGAA
GCTGAAACAGTCAGATATCGTATGCAATAACAATGGatattgaaagaatt
ttgaacATTAGAAACCAACGTAATGATATACAATGATAAAACTGATGCTG
GAGAAAATATAATGCTTATTTTCAATTGGTTGATAAAAGTATAGAAATAG
ACAGAAATAGACAATTGAAAGAATCATCTGCTTTCAATGTAATCGCACGT
CTTCAATGAAGGAAATATTGCATACATACTTAATGGGTGTGCTCTTTCAA
GTAAATTTCTCAAAGTCTTTGAATATTTTCCATGGGCACCTTGGAAAGTG
GACTTAAATTTCGATTCGATTgttcatttattaaatttggtctATTTAAT
CAGAGATTTAATATAAAATGCTCAATAACCTTCTGAATAGTtcataaaca
taaaatatcgaCCAAAGTTGAATTATTGTTTAAGGGTTGGTTGAACATTT
TCAGGgaataaaaaattaagttcTAGGGGTCtaagaaagatgtttttttt
tttctacagagagtactctcgggtacctaatagccatccccccccgctaa
ttaatttttcgaaaagtttccacccaggacattcttattccaacc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026165	XLOC_026165	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00042309-exon-sc0003342-1491911889:3747..4261	TCONS_00042309-exon-sc0003342-1491911889:3747..4261	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1510915933:3747..4261	TCONS_00042309-exon-sc0003342-1510915933:3747..4261	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1575043694:3747..4261	TCONS_00042309-exon-sc0003342-1575043694:3747..4261	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1491911889:6072..6131	TCONS_00042309-exon-sc0003342-1491911889:6072..6131	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1510915933:6072..6131	TCONS_00042309-exon-sc0003342-1510915933:6072..6131	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1575043694:6072..6131	TCONS_00042309-exon-sc0003342-1575043694:6072..6131	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1491911889:8081..8791	TCONS_00042309-exon-sc0003342-1491911889:8081..8791	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1510915933:8081..8791	TCONS_00042309-exon-sc0003342-1510915933:8081..8791	Clytia hemisphaerica	exon
TCONS_00042309-exon-sc0003342-1575043694:8081..8791	TCONS_00042309-exon-sc0003342-1575043694:8081..8791	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003342	supercontig	sc0003342:3747..8791 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.597686	1.0033	0.351628	0.127358	19.5709	13.094	7.01815	6.58962	2.2639	3.41541	4.65645	1.86365	1.71259	1.93103	2.34974	3.28903	3.01075	2.44406	1.40232	1.53176	2.68986	2.92592	1.90137	3.14259	3.01807	4.16362	3.74771	1.82759	2.0821	1.09171

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00042309 vs. Swiss-Prot (Human)

BLAST of TCONS_00042309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00042309 (transcript) - C. hemisphaerica