TCONS_00042304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042304
Unique NameTCONS_00042304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042304 ID=TCONS_00042304|Name=TCONS_00042304|organism=Clytia hemisphaerica|type=transcript|length=609bp
NCATAGACCCGTGTGCTAATAGTAATATGTAGGCTGACAAgctgcaaaat
caaaacattgaaatattcAGTTTCAAGCAGCCACACTGGTTGACTTTAAA
GAAGATTTGAGCAGTTTCAACTGGTTTTTATGGTCGAAATCAATGCAGAA
TGAACTGTTATAGTTTGTGTAATGttttggcttcaaattatttgtAAAGT
GTAACTCATTCTATCACACAATATCCATGGGGGTTGAATTGGTATACGTC
AGACGTCGCCCACATTTTTGTTGTCAGATGAAATGACATTAGTAACATGT
CTCATAATCCAGTTTTCAAGCCACAACAAGGCTAAGTAAATCTTATTTGT
ATAATTCTGAAAGAACACTCAATTTGCATACAAAGTGGCTCTCATTGGAC
TACCCAAGCTCTTGTGGTGTGGTTCAAAGTTTTTGTATATAATTCAACAT
TTCGTGGACGACAAAGACCAGGCTGCACAAGCCGTCTCCATGACCATATA
AGTGACTAGCACTTGGATTTATCACTGATTTACTTGCTCAAATCACATAC
AATGGCCTTTGTTTACAACAGAAAGGTCATTTGACCAATTTCATCTCATG
GACATTTNN
Run BLAST on NCBI

transcript from alignment at sc0003337:8003..8682+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042304 ID=TCONS_00042304|Name=TCONS_00042304|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at sc0003337:8003..8682+ (Clytia hemisphaerica)
NCATAGACCCGTGTGCTAATAGTAATATGTAGGCTGACAAgctgcaaaat
caaaacattgaaatattcAGTTTCAAGCAGCCACACTGGTTGACTTTAAA
GAAGATTTGAGCAGTTTCAACTGGTTTTTATGGTCGAAATCAATGCAGAA
TGAACTGTTATAGTTTGTGTAATGttttggcttcaaattatttgtAAAGT
GTAACTCATTCTATCACACAATATCCATGGGGGTTGAATTGGTATACGTC
AGACGTCGCCCACATTTTTGTTGTCAGATGAAATGACATTAGTAACATGT
CTCATAATCCAGTTTTCAAGCCACAACAAGGCTAAGTAAATCTTATTTGT
ATAATTCTGAAAGAACACTCAATTTGCATACAAAGTGGCTCTCATTGGAC
TACCCAAGCTCTTGTGGTGTGGTTCAAAGTTTTTGTATATAATTCAACAT
TTCGTGGACGACAAAGACCAGGCTGCACAAGGCGTCTCTATGACTATGAC
CATATATNATATAATTCAACATTTCGTGACGGCAAAGACCAGGCTGCACA
AGCCGTCTCCATGACCATATAAGTGACTAGCACTTGGATTTATCACTGAT
TTACTTGCTCAAATCACATACAATGGCCTTTGTTTACAACAGAAAGGTCA
TTTGACCAATTTCATCTCATGGACATTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026160XLOC_026160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042304-exon-sc0003337-1491911889:8003..8473TCONS_00042304-exon-sc0003337-1491911889:8003..8473Clytia hemisphaericaexon
TCONS_00042304-exon-sc0003337-1510915933:8003..8473TCONS_00042304-exon-sc0003337-1510915933:8003..8473Clytia hemisphaericaexon
TCONS_00042304-exon-sc0003337-1575043694:8003..8473TCONS_00042304-exon-sc0003337-1575043694:8003..8473Clytia hemisphaericaexon
TCONS_00042304-exon-sc0003337-1491911889:8545..8682TCONS_00042304-exon-sc0003337-1491911889:8545..8682Clytia hemisphaericaexon
TCONS_00042304-exon-sc0003337-1510915933:8545..8682TCONS_00042304-exon-sc0003337-1510915933:8545..8682Clytia hemisphaericaexon
TCONS_00042304-exon-sc0003337-1575043694:8545..8682TCONS_00042304-exon-sc0003337-1575043694:8545..8682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003337supercontigsc0003337:8003..8682 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.5103	14.8763	11.4241	9.70727	19.2213	13.3343	13.6781	15.156	9.24085	10.8501	7.01104	9.94118	7.60485	7.47482	9.04131	9.56913	13.2857	13.1183	8.54962	11.0123	22.6346	18.1992	15.9473	17.256	2.46528	2.20286	11.0798	9.68316	8.09874	6.74483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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