|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042297 ID=TCONS_00042297|Name=TCONS_00042297|organism=Clytia hemisphaerica|type=transcript|length=2161bp
ttttcaaagaggatgtcctgttgaataattatgtagtccagccataaaaa
caatgatagagccatgaataattactgtatcatgcatattgcaataatta
tgcatggttttatcattgtttttctgctggactacataattattcaacag
ggttgcctctttgaaaaaaggtctNATCAAATGGAATGAGAAACCTTGCC
TATGAAAAGATCTGGTCGAAACCAAGCTTTCATAAACAAAAAGATATTGA
TTTCCTTGGTAATATTTCACATCTGCCGATTCGCGAGTTGAGTGTTGgag
atttttcttgttcatgGGTTGAAATTGTTGGAATGATACCTAGCCTTCAA
TTGTTACATGTCAATGCTTCTTCAAACAAGCCTTGCAAACCATTTGACAC
ACAATTGCGTCATTTGAGGGTTCCTATTGTTATTCACACCAGTGCCTTTA
ATCTTGGAGGAAAACATTTTGATCATCTTTNGTTCCTATTGTTATTCACA
CCAGTGCCTTTAATCTTGGAggagaaaattttgatcatCTTTTGTCAATC
CTTGAAGCTATTACAGTAAAAGAAATCATCATCGACCATTCTTCGTGGCC
GCACGATGGTTCGCGATGGTCCTATGAGCGCTTTAAGCTACTTGCTGATA
ACTTTTATATATCTTGTGTTTCAATATCCTGCATCGACGTTACGGAAAGT
AATATCAGTGACTTTATAAATCTCCTGTCAAAAATGAAATACTGCAAagt
aaaaatagatttcaagTCAAAAAGCTATTTGTTCACTTTAAACGATTTAA
ATTCGATGGTGAACAATGGAACTCGAGTTTTCCTGATAAGCAGTTCTTCC
TTAGAAACCAATGGTGAGATTGCCACCTTGATTAAATTTGCTGAAGTCAT
GaggaaaatgaaacatttgaaagaattcaATTTCGACTGTGGGTATTTTA
AAGATCAGAATGCGCCACCAATGGAGTTATTGACAGATTTACCTTTTAAA
TATCTTCGTTCGCATCAATTCAACATCTATGGAAAAAGAGATGTCCAAAT
GATGGTGTCGACAATTTCCAAAATCAAATCTCGTCAAGGTGATCACAaga
attcttcttttttaagaGGATTTCAACTCATGCGTAATGTTGTTAGTGAT
TATTTACTCACACCGGACGATTTTAAGTTATTGAAGAATCTACCTCTTAC
ATATGTTGATTTGCGTGCTTTGGATCTAAAGCAAGACAATATCAAAGATT
TCCGTGAAAtcatgaaacaaatgaaaattctagatatcaaattttattat
CAGCTGTTTCCGAGAAGGAAAGACTTTAGAATTGATGTCGAAAAATTTGG
GCCTGGTAGGATTTATAATACAATCATTGCCATAAATGACGATTGAGTTT
TCGATTATTCATGTACTGTTCCATTCACATCATTTTTTTGgtattatttt
aaattgttacCCTTCTTTGGTACTTTCTGTCATTGTAATGTTATTTTGGT
TCCCCGATATATCTTGCagatattataattttttcaggAACTTTTAAAGC
AATATATTTTGTTAAGGATTTATATTTGTTACTTCTCGGCAAAANNataa
aataaatttaaaatttggaagtctttttttccgacgtcacttttgtccga
aaacgaaagatttttggGTGtcaaatgttgaataagggtttttcactaag
ataatattaataaaagttgattttggcggatttttgacataattagaaat
aaaggaacaaaacagctaaatccaatttcttgactcttgaaagcccAATC
CTAACAAGcttaccaaaatttaagaaaactcgggtttaggggcctaacct
caaaatcggaaactttggatttttataaaatatgtgactcctcttccgcg
attcatattacgttttttatgtttttttttactcgttgtcggacaaaatt
gttgtcggaatactgacgcattcgtcaaacccaacgtcggacatttatac
tgtcggactagaaagcgtcggactactgacgacctcccggCAAAATTTTG
GGAAGACACTAAACTGGGTTATTGGATCGCTCAGAgtctcatttttcttt
ttggcacctTCGGTGACACTGGATTAATGAGTGGCGGGTTGGGCGGCGAC
AGTAGGGGGAC Run BLAST on NCBI protein sequence of TCONS_00042297-protein >TCONS_00042297-protein ID=TCONS_00042297-protein|Name=TCONS_00042297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MKYCKVKIDFKSKSYLFTLNDLNSMVNNGTRVFLISSSSLETNGEIATLI
KFAEVMRKMKHLKEFNFDCGYFKDQNAPPMELLTDLPFKYLRSHQFNIYG
KRDVQMMVSTISKIKSRQGDHKNSSFLRGFQLMRNVVSDYLLTPDDFKLL
KNLPLTYVDLRALDLKQDNIKDFREIMKQMKILDIKFYYQLFPRRKDFRI
DVEKFGPGRIYNTIIAINDD Run BLAST on NCBI transcript from alignment at sc0003333:2961..5121 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042297 ID=TCONS_00042297|Name=TCONS_00042297|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at sc0003333:2961..5121 (Clytia hemisphaerica)
GTCCCCCTACTGTCGCCGCCCAACCCGCCACTCATTAATCCAGTGTCACC
GAaggtgccaaaaagaaaaatgagacTCTGAGCGATCCAATAACCCAGTT
TAGTGTCTTCCCAAAATTTTGccgggaggtcgtcagtagtccgacgcttt
ctagtccgacagtataaatgtccgacgttgggtttgacgaatgcgtcagt
attccgacaacaattttgtccgacaacgagtaaaaaaaaacataaaaaac
gtaatatgaatcgcggaagaggagtcacatattttataaaaatccaaagt
ttccgattttgaggttaggcccctaaacccgagttttcttaaattttggt
aagCTTGTTAGGATTgggctttcaagagtcaagaaattggatttagctgt
tttgttcctttatttctaattatgtcaaaaatccgccaaaatcaactttt
attaatattatcttagtgaaaaacccttattcaacatttgaCACccaaaa
atctttcgttttcggacaaaagtgacgtcggaaaaaaagacttccaaatt
ttaaatttattttatNNTTTTGCCGAGAAGTAACAAATATAAATCCTTAA
CAAAATATATTGCTTTAAAAGTTcctgaaaaaattataatatctGCAAGA
TATATCGGGGAACCAAAATAACATTACAATGACAGAAAGTACCAAAGAAG
GgtaacaatttaaaataatacCAAAAAAATGATGTGAATGGAACAGTACA
TGAATAATCGAAAACTCAATCGTCATTTATGGCAATGATTGTATTATAAA
TCCTACCAGGCCCAAATTTTTCGACATCAATTCTAAAGTCTTTCCTTCTC
GGAAACAGCTGataataaaatttgatatctagaattttcatttgtttcat
gaTTTCACGGAAATCTTTGATATTGTCTTGCTTTAGATCCAAAGCACGCA
AATCAACATATGTAAGAGGTAGATTCTTCAATAACTTAAAATCGTCCGGT
GTGAGTAAATAATCACTAACAACATTACGCATGAGTTGAAATCCtcttaa
aaaagaagaattctTGTGATCACCTTGACGAGATTTGATTTTGGAAATTG
TCGACACCATCATTTGGACATCTCTTTTTCCATAGATGTTGAATTGATGC
GAACGAAGATATTTAAAAGGTAAATCTGTCAATAACTCCATTGGTGGCGC
ATTCTGATCTTTAAAATACCCACAGTCGAAATtgaattctttcaaatgtt
tcattttcctCATGACTTCAGCAAATTTAATCAAGGTGGCAATCTCACCA
TTGGTTTCTAAGGAAGAACTGCTTATCAGGAAAACTCGAGTTCCATTGTT
CACCATCGAATTTAAATCGTTTAAAGTGAACAAATAGCTTTTTGActtga
aatctatttttactTTGCAGTATTTCATTTTTGACAGGAGATTTATAAAG
TCACTGATATTACTTTCCGTAACGTCGATGCAGGATATTGAAACACAAGA
TATATAAAAGTTATCAGCAAGTAGCTTAAAGCGCTCATAGGACCATCGCG
AACCATCGTGCGGCCACGAAGAATGGTCGATGATGATTTCTTTTACTGTA
ATAGCTTCAAGGATTGACAAAAGatgatcaaaattttctccTCCAAGATT
AAAGGCACTGGTGTGAATAACAATAGGAACNAAAGATGATCAAAATGTTT
TCCTCCAAGATTAAAGGCACTGGTGTGAATAACAATAGGAACCCTCAAAT
GACGCAATTGTGTGTCAAATGGTTTGCAAGGCTTGTTTGAAGAAGCATTG
ACATGTAACAATTGAAGGCTAGGTATCATTCCAACAATTTCAACCcatga
acaagaaaaatctcCAACACTCAACTCGCGAATCGGCAGATGTGAAATAT
TACCAAGGAAATCAATATCTTTTTGTTTATGAAAGCTTGGTTTCGACCAG
ATCTTTTCATAGGCAAGGTTTCTCATTCCATTTGATNagaccttttttca
aagaggcaaccctgttgaataattatgtagtccagcagaaaaacaatgat
aaaaccatgcataattattgcaatatgcatgatacagtaattattcatgg
ctctatcattgtttttatggctggactacataattattcaacaggacatc
ctctttgaaaa Coding sequence (CDS) from alignment at sc0003333:2961..5121 >TCONS_00042297 ID=TCONS_00042297|Name=TCONS_00042297|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0003333:2961..5121 (Clytia hemisphaerica)
TCAATCGTCATTTATGGCAATGATTGTATTATAAATCCTACCAGGCCCAA
ATTTTTCGACATCAATTCTAAAGTCTTTCCTTCTCGGAAACAGCTGataa
taaaatttgatatctagaattttcatttgtttcatgaTTTCACGGAAATC
TTTGATATTGTCTTGCTTTAGATCCAAAGCACGCAAATCAACATATGTAA
GAGGTAGATTCTTCAATAACTTAAAATCGTCCGGTGTGAGTAAATAATCA
CTAACAACATTACGCATGAGTTGAAATCCtcttaaaaaagaagaattctT
GTGATCACCTTGACGAGATTTGATTTTGGAAATTGTCGACACCATCATTT
GGACATCTCTTTTTCCATAGATGTTGAATTGATGCGAACGAAGATATTTA
AAAGGTAAATCTGTCAATAACTCCATTGGTGGCGCATTCTGATCTTTAAA
ATACCCACAGTCGAAATtgaattctttcaaatgtttcattttcctCATGA
CTTCAGCAAATTTAATCAAGGTGGCAATCTCACCATTGGTTTCTAAGGAA
GAACTGCTTATCAGGAAAACTCGAGTTCCATTGTTCACCATCGAATTTAA
ATCGTTTAAAGTGAACAAATAGCTTTTTGActtgaaatctatttttactT
TGCAGTATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042297-exon-sc0003333-1491911889:2961..5121 | TCONS_00042297-exon-sc0003333-1491911889:2961..5121 | Clytia hemisphaerica | exon |
| TCONS_00042297-exon-sc0003333-1510915933:2961..5121 | TCONS_00042297-exon-sc0003333-1510915933:2961..5121 | Clytia hemisphaerica | exon |
| TCONS_00042297-exon-sc0003333-1575043694:2961..5121 | TCONS_00042297-exon-sc0003333-1575043694:2961..5121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003333 | supercontig | sc0003333:2961..5121 . |
Blast
The following BLAST results are available for this feature:
|
