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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042291 ID=TCONS_00042291|Name=TCONS_00042291|organism=Clytia hemisphaerica|type=transcript|length=2232bpRun BLAST on NCBI protein sequence of TCONS_00042291-protein >TCONS_00042291-protein ID=TCONS_00042291-protein|Name=TCONS_00042291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp SKTWIKISFLSCLVFVALAETGEADKVPEAPKEDDGVLVLTDDNFKGVIERun BLAST on NCBI transcript from alignment at sc0003330:3133..11384- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042291 ID=TCONS_00042291|Name=TCONS_00042291|organism=Clytia hemisphaerica|type=transcript|length=8252bp|location=Sequence derived from alignment at sc0003330:3133..11384- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003330:3133..11384- >TCONS_00042291 ID=TCONS_00042291|Name=TCONS_00042291|organism=Clytia hemisphaerica|type=CDS|length=16686bp|location=Sequence derived from alignment at sc0003330:3133..11384- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00042291 vs. Swiss-Prot (Human)
Match: PDIA4 (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2) HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0 Identity = 294/588 (50.00%), Postives = 400/588 (68.03%), Query Frame = 3
Query: 105 DGVLVLTDDNFKGVIEKEKFVLVEFYAPWCGHCKXXXXXXXXXXKQLKKSENPVPLAKVDCTVEKDVCNTHQVQGYPTLKWFKDGEASDYDGPRDHDGIVSYVLERSDPNYKPPPEAVLTLTKDNFDEITQKEELMLVEFYAPWCGHCKKIGPELEKAAKVLQKREKPIAIGKVDATVETDLATKFEVTGYPTMLIMRNGKKYEYKGPRNEPEISEYLINQEGEATKLKATMKEVKNFIKEPNNNDPVILAVADNTEDPIYKLFVEANNDVRDDYSFGHTFAKEAKKYFGLKKSAILLIQPDHLRSKHEAKQHVYQDESGSP--SEVQKFYKKNYIPLVGFFRTDNE-KRFEKKPMVLVFYDVNFSPTYRSITQFWRSKVVEVAKEFPDIQFAVANEEDSEGRLKDLGLTESGEDVNVGAYDAAGRRYALVDEEFSEDTLTEFVEEFLKGNVKPVIKSQRAAPKAKPGKVQVVTGNTFDQIVMDESKEVFIEFYAPWCGHCKAIEGYINKLAAKYKGEKDIIIAKMDGTLNEGPS-QYAFEGFPTIYYSLPGKKNDPIKLD-GKRDMDALVEFIETNSKVLKNKKTEL 1853
+GVLVL D NF + + VL+EFYAPWCGHCK AP Y + A LK + P+P+AK+D T + + V GYPT+K K G+A DY+G R + IV+ V E S P++ PPPE L LTK+NFDE+ +++LVEFYAPWCGHCKK+ PE EKAAK L KR PI + KVDAT ETDLA +F+V+GYPT+ I R G+ Y+Y GPR + I +Y+I Q G +K T+K+V+ F+K + +D +I+ V DP Y+ + +A N++R+DY F HTF+ E K+ + + ++++QP+ +SK+E + H+ D GS S ++ F K +PLVG + N+ KR+ ++P+V+V+Y V+FS YR+ TQFWRSKV+EVAK+FP+ FA+A+EED G +KDLGL+ESGEDVN D +G+++A+ EEF DTL EFV F KG +KPVIKSQ PK G V+VV G TFD IVMD K+V IEFYAPWCGHCK +E N LA KYKG+K ++IAKMD T N+ PS +Y EGFPTIY++ G K +P+K + G RD++ L +FIE ++ L K EL
Sbjct: 62 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSGPPSKEILTLKQVQEFLK--DGDDVIIIGVFKGESDPAYQQYQDAANNLREDYKFHHTFSTEIAKFLKVSQGQLVVMQPEKFQSKYEPRSHM-MDVQGSTQDSAIKDFVLKYALPLVGHRKVSNDAKRYTRRPLVVVYYSVDFSFDYRAATQFWRSKVLEVAKDFPEYTFAIADEEDYAGEVKDLGLSESGEDVNAAILDESGKKFAMEPEEFDSDTLREFVTAFKKGKLKPVIKSQ-PVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSGDKKNPVKFEGGDRDLEHLSKFIEEHATKLSRTKEEL 645 The following BLAST results are available for this feature:
BLAST of TCONS_00042291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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