TCONS_00042289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042289
Unique NameTCONS_00042289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042289 ID=TCONS_00042289|Name=TCONS_00042289|organism=Clytia hemisphaerica|type=transcript|length=682bp
GAAAACTTGAGATTTTTTGTGACATCAGAAGGCTGTTTGTATTTTCAAGT
CTTGTTGAAAAACAATATGAATTATTGATTTAGGTAGAAACAGAAAATGA
TGAGAATTCGGAAAACTTCGAACTTTTAGTCTTTAACAATATCATGTCAT
CAAGGAAAGCACATCAAAACATTGGATTCAAAACTGCCACAACATTGAGA
CCATCCATCCAACAGGTTTACAATGAAGAAGAACAACAACGGAAACAAGA
TATTCTCAacagaaaacaacaacaacaaagtaCCCAGAAATTTCTTCTTC
GGGATCACCTAGTTCTTCACGAAACGGTTGATCAACAAGACTACCAACGG
TTGGCAAAGTTGATGCCTTTGGTGAAGAATAGAACTTATAACATCAATGC
GCCTGATGAAGATTGGTGTTGCAGGAGCCCCTTACATGTTGCATGTTCTA
ATGgTAGCATACGATGTTGTCAAATTCTTTTAGAGCATGGTGCCTACCAT
TCAACTCTGACGTCGTCAGGTATCACACCTGCTCATTTCGCAGCAGAGAG
AGGCTTTTTAGACATCCTACAACTGTTGTTTTATTACGGAGCCAACTTAC
AAATGGAAGACTTTTCTAAGGAGAGACCTATTGACCTGGCAGAGAAATAC
AATCAAATTGAATGTGTGGAGTTcttaaaaaa
Run BLAST on NCBI

protein sequence of Akr Ankyrin repeats containing protein

>TCONS_00042289-protein ID=TCONS_00042289-protein|Name=Akr Ankyrin repeats containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MSSRKAHQNIGFKTATTLRPSIQQVYNEEEQQRKQDILNRKQQQQSTQKF
LLRDHLVLHETVDQQDYQRLAKLMPLVKNRTYNINAPDEDWCCRSPLHVA
CSNGSIRCCQILLEHGAYHSTLTSSGITPAHFAAERGFLDILQLLFYYGA
NLQMEDFSKERPIDLAEKYNQIECVEFLK
Run BLAST on NCBI

transcript from alignment at sc0003330:1808..3001-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042289 ID=TCONS_00042289|Name=TCONS_00042289|organism=Clytia hemisphaerica|type=transcript|length=1194bp|location=Sequence derived from alignment at sc0003330:1808..3001- (Clytia hemisphaerica)
GAAAACTTGAGATTTTTTGTGACATCAGAAGGCTGTTTGTATTTTCAAGT
CTTGTTGAAAAACAATATGAATTATTGATTTAGGTAGAAACAGAAAATGA
TGAGAATTCGGAAAACTTCGAACTTTTAGTCTTTAACAATATCATGTCAT
CAAGGAAAGCACATCAAAACATTGGATTCAAAACTGCCACAACATTGAGA
CCATCCATCCAACAGGTTTACAATGAAGAAGAACAACAACGGAAACAAGA
TATTCTCAACAGAAAACAACAACAACAAAGTACCCAGAAATTTCTTCTTC
GGGATCACCTAGTTCTTCACGAAACGGTTGATCAACAAGACTACCAACGG
TTGGCAAAGTTGATGCCTTTGGTGAAGAATAGAACTTATAACATCAATGC
GCCTGATGAAGATTGGTGTTGCAGGAGCCCCTTACATGTTGCATGTTCTA
ATGGTATGTTAACGGTTTTGGAATCAACCATGAAAATCTGTATTCGGTTT
TACTCTTTACTCTTACTAGCACACGTTTTTTATAAGAACATAAGGCTTCG
ATGGCCAAAATGTTAAGAACATTTTAAGGCTTTGCAGACTTTAAACCACC
CAATTTCTTAGGAAAGTGGACAAAAATACTCAAATGGTGAAATAAGAACA
TGTTAAAGAACATTTTTATGCCTAAAACTCAAAAAGTTAAGAACATCCGA
AGGCTTCAAAAGTTTTGGATGTTCTTATAAGAAAAACGTGTATCACTTTT
TGATAATCTTACATCAGTGAGATGGTTATCACGTGGCCTTCGAATTATTT
AGGTAGCACAGATAGGTAGATAGACGTTTATTCGAAGGTAAATTTGGTGT
CCTATGAAAAAAATAAAATCTGAAAAATTTTGCCTTTCAAATTTAAATCC
CCACCAAATTGAATTCCTAAATTCAGTATTTTTGGTATTATTCAAATCTG
TTTTTTTTCTTCCAGGTAGCATACGATGTTGTCAAATTCTTTTAGAGCAT
GGTGCCTACCATTCAACTCTGACGTCGTCAGGTATCACACCTGCTCATTT
CGCAGCAGAGAGAGGCTTTTTAGACATCCTACAACTGTTGTTTTATTACG
GAGCCAACTTACAAATGGAAGACTTTTCTAAGGAGAGACCTATTGACCTG
GCAGAGAAATACAATCAAATTGAATGTGTGGAGTTCTTAAAAAA

Coding sequence (CDS) from alignment at sc0003330:1808..3001-

>TCONS_00042289 ID=TCONS_00042289|Name=TCONS_00042289|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0003330:1808..3001- (Clytia hemisphaerica)
GTAGCATACGATGTTGTCAAATTCTTTTAGAGCATGGTGCCTACCATTCA
ACTCTGACGTCGTCAGGTATCACACCTGCTCATTTCGCAGCAGAGAGAGG
CTTTTTAGACATCCTACAACTGTTGTTTTATTACGGAGCCAACTTACAAA
TGGAAGACTTTTCTAAGGAGAGACCTATTGACCTGGCAGAGAAATACAAT
CAAATTGAATGTGTGGAGTTCTTAAAAATGTCATCAAGGAAAGCACATCA
AAACATTGGATTCAAAACTGCCACAACATTGAGACCATCCATCCAACAGG
TTTACAATGAAGAAGAACAACAACGGAAACAAGATATTCTCAACAGAAAA
CAACAACAACAAAGTACCCAGAAATTTCTTCTTCGGGATCACCTAGTTCT
TCACGAAACGGTTGATCAACAAGACTACCAACGGTTGGCAAAGTTGATGC
CTTTGGTGAAGAATAGAACTTATAACATCAATGCGCCTGATGAAGATTGG
TGTTGCAGGAGCCCCTTACATGTTGCATGTTCTAATGGTAGCATACGATG
TTGTCAAATTCTTTTAGAGCATGGTGCCTACCATTCAACTCTGACGTCGT
CAGGTATCACACCTGCTCATTTCGCAGCAGAGAGAGGCTTTTTAGACATC
CTACAACTGTTGTTTTATTACGGAGCCAACTTACAAATGGAAGACTTTTC
TAAGGAGAGACCTATTGACCTGGCAGAGAAATACAATCAAATTGAATGTG
TGGAGTTCTTAAAAATGTCATCAAGGAAAGCACATCAAAACATTGGATTC
AAAACTGCCACAACATTGAGACCATCCATCCAACAGGTTTACAATGAAGA
AGAACAACAACGGAAACAAGATATTCTCAACAGAAAACAACAACAACAAA
GTACCCAGAAATTTCTTCTTCGGGATCACCTAGTTCTTCACGAAACGGTT
GATCAACAAGACTACCAACGGTTGGCAAAGTTGATGCCTTTGGTGAAGAA
TAGAACTTATAACATCAATGCGCCTGATGAAGATTGGTGTTGCAGGAGCC
CCTTACATGTTGCATGTTCTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026147XLOC_026147Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Akr Ankyrin repeats containing proteinTCONS_00042289-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042289-exon-sc0003330-1575043694:2549..3001TCONS_00042289-exon-sc0003330-1575043694:2549..3001Clytia hemisphaericaexon
TCONS_00042289-exon-sc0003330-1575043694:1808..2036TCONS_00042289-exon-sc0003330-1575043694:1808..2036Clytia hemisphaericaexon
TCONS_00042289-exon-sc0003330-1510915933:2549..3001TCONS_00042289-exon-sc0003330-1510915933:2549..3001Clytia hemisphaericaexon
TCONS_00042289-exon-sc0003330-1510915933:1808..2036TCONS_00042289-exon-sc0003330-1510915933:1808..2036Clytia hemisphaericaexon
TCONS_00042289-exon-sc0003330-1491911889:2549..3001TCONS_00042289-exon-sc0003330-1491911889:2549..3001Clytia hemisphaericaexon
TCONS_00042289-exon-sc0003330-1491911889:1808..2036TCONS_00042289-exon-sc0003330-1491911889:1808..2036Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003330supercontigsc0003330:1808..3001 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.450035	0.219427	0	0.249259	121.986	90.3206	140.694	135.417	50.944	61.2234	24.3171	34.6177	0.399072	0.82888	0.511089	0.822716	1.29505	2.19307	1.27573	1.25152	1.52292	0.848944	1.118	0.860053	0.322122	0.215614	0.925631	0	0.166501	0.169638
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00042289 vs. Swiss-Prot (Human)
Match: ANR66 (Ankyrin repeat domain-containing protein 66 OS=Homo sapiens GN=ANKRD66 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.691e-20
Identity = 49/128 (38.28%), Postives = 69/128 (53.91%), Query Frame = 3 
Query:  297 LRDHLVLHETVDQQDYQRLAKLMPLVKNRTYNINAPDEDWCCRSPLHVACSNGSIRCCQILLEHGAYHSTLTSSGITPAHFAAERGFLDILQLLFYYGANLQMEDFSKERPIDLAEKYNQIECVEFLK 680
            + D   LH+ V   DY  + K++   K    + N  D DW  R+PLH A   G +   ++L+E+GA    +TS G TPAHFAAE G L+IL+ L    A +   DF  + P  +A+ Y Q  CV FL+
Sbjct:   61 MSDMTKLHQAVAAGDYSLVKKIL---KKGLCDPNYKDVDWNDRTPLHWAAIKGQMEVIRLLIEYGARPCLVTSVGWTPAHFAAEAGHLNILKTLHALHAAIDAPDFFGDTPKRIAQIYGQKACVAFLE 185
The following BLAST results are available for this feature:
BLAST of TCONS_00042289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANR661.691e-2038.28Ankyrin repeat domain-containing protein 66 OS=Hom... [more]
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