TCONS_00042286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042286
Unique NameTCONS_00042286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042286 ID=TCONS_00042286|Name=TCONS_00042286|organism=Clytia hemisphaerica|type=transcript|length=595bp
TGAAACCTCATCTTCGTTAAACaatcaaagtatttcaaaaaaataaaaaa
aaaatctttcagatTATTATCTACATCAAGTGAAGtttggcaaaaaaaac
aaaaaaaagtagtAGAATTGCCTGTTAGTTTTGGCGGAGACTTCCTTACG
GTTTCCTCACAGACAGCTCAGAAAAAATTCAGAGACAGCCTGGGAACCCA
ATTTTGACCACCGGGGTCTGGAGGTTTTTGCCCGGGGTAATGGTTTTCTC
CGCCAAACTATTCAGCTTCAAGATGAAGGTGCTAGGGTTAAGAAGTATTT
TATATATCTGAGAGAATAAAAGgatagatttgtaatttgaGAAAGATGTT
TTTATCGCGTAGCAGTAGGGAAGCTTGTAATCAGAATATGTAATGTAAGA
AAGCGTATCGGGAAAAAGAGAGTTGTAATTATATTTTGATTGTCAGTAGG
gttgttttttattattattattatcattattctAGTTGTTGTATTTTCGT
AATTTATAACCTTAGTCGCGTTTAGGCTGGCTGGGCCTTTTTTCCCACGA
GAGCTTGAAACGGTTCATTACTGTCATAAATAAACGAGTGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0003327:7719..8313

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042286 ID=TCONS_00042286|Name=TCONS_00042286|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0003327:7719..8313 (Clytia hemisphaerica)
CTTTTCACTCGTTTATTTATGACAGTAATGAACCGTTTCAAGCTCTCGTG
GGAAAAAAGGCCCAGCCAGCCTAAACGCGACTAAGGTTATAAATTACGAA
AATACAACAACTagaataatgataataataataataaaaaacaacCCTAC
TGACAATCAAAATATAATTACAACTCTCTTTTTCCCGATACGCTTTCTTA
CATTACATATTCTGATTACAAGCTTCCCTACTGCTACGCGATAAAAACAT
CTTTCtcaaattacaaatctatcCTTTTATTCTCTCAGATATATAAAATA
CTTCTTAACCCTAGCACCTTCATCTTGAAGCTGAATAGTTTGGCGGAGAA
AACCATTACCCCGGGCAAAAACCTCCAGACCCCGGTGGTCAAAATTGGGT
TCCCAGGCTGTCTCTGAATTTTTTCTGAGCTGTCTGTGAGGAAACCGTAA
GGAAGTCTCCGCCAAAACTAACAGGCAATTCTactacttttttttgtttt
ttttgccaaaCTTCACTTGATGTAGATAATAatctgaaagattttttttt
tatttttttgaaatactttgattGTTTAACGAAGATGAGGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026144XLOC_026144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042286-exon-sc0003327-1491911889:7719..8313TCONS_00042286-exon-sc0003327-1491911889:7719..8313Clytia hemisphaericaexon
TCONS_00042286-exon-sc0003327-1510915933:7719..8313TCONS_00042286-exon-sc0003327-1510915933:7719..8313Clytia hemisphaericaexon
TCONS_00042286-exon-sc0003327-1575043694:7719..8313TCONS_00042286-exon-sc0003327-1575043694:7719..8313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003327supercontigsc0003327:7719..8313 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29778	1.79256	0.520333	0.712691	0.49579	0	0	0.55313	0	0.0959366	0	0.183637	0.244509	0.317406	0.0521902	0.0560081	0	0.14144	0	0	0	0.260071	0.526918	0.287427	0.296043	0.440352	0	0	0.612086	0.623619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top