TCONS_00042284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042284
Unique NameTCONS_00042284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042284 ID=TCONS_00042284|Name=TCONS_00042284|organism=Clytia hemisphaerica|type=transcript|length=1465bp
AGCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAAATCATTG
ACATGCAGTTCCCAATGGGTGAAGCAAgatATCAAAAGCTCATGCTTGAG
CGGATGCTTGAGATTTCAAAGTGTCAAGAGGAAATCAGAAGTAGGCTTGT
CCTGTTGGAGAGTGGTACTGCTGCTGGTCCATCTCGAGCGGTGTCAGAGA
AGGCAAAGTTATTACCCCGTCATCCTTTCACCAACGTAAATGACTTTGAA
GAATGGGAAAAAGATCTAGACAATGGTCAAGCAAATCAATTAACCAAAGA
GTTTGTCAGAATTGGAGGCAAAGACAAGATGGCATTAATGCGTAGTTGCA
TCGATAGTTTAATGGATCGAACAACCCAGTCAAAATTTAACTTGGCTGCT
TCTGTTAAacgaaacattcgaaaaaagaagCCGTTTGGCAACACAAAGAC
GTTCAAATGTCTGATTGGTAAGTTCCATGCTTCATCAATATAGTACGCAC
GCAGCGAACGGGGAACGTCATCTAACGTAACGTCGTTTCTAAAGATAATT
TGTAAGGTTTTTAAGGGAATGAGAATAGTGACTACTAATGACTTATTTTT
TTGTTACATATGCAGGGCAAAAGTTATTCAGGAAGGTCAATTCCAAAGGC
GTTGCGAAAGGCCCAACGCAGCAAGATCTGCGAACTTGCATTGGAAACGT
CTTCAAGCATGCGAAGCCAGGAGAAGAGGAGAAGATCGACGACGATGAAC
CGGCGAACGACGAACGTGAACGTGAACGTGAACCGGTGAACGAAGAGACT
TCCCCAAGTCTGTCGGGAAGCGGATCTGAAAGTGACGTTGAATCTGGGAA
GAGGAAAAGGCAGCGTGTCATCAGTTCAAGCAGTGACGATGATGATCTTG
ATCGttattaaagtctatttcacATTAGCTGTCAGTAAATTTTGAAATgc
taataacttttgatatactTTGAGCTAGATAGCGATATCCTTTGActaaa
tgaatatttttcaaaagttttttcacagtaatgatgttctaagattCGAA
AATCACCTTTGTAAAAATGGTGATTATATCACAATTCTACCAgcagttga
tattttttcttttccatttttcatcttcattttcacaaatttttcgaaat
ttattttgttgataATATCCCACTCacgattatcttttcaatgcgCGTAA
AATCGCTATCTAGCTCGAagtatatcaaaagttatgagcaTTTCAAAATT
TACTGACAGCTAATATGAAATATACTTTAGGAACAAATTAGGGATTATAA
CAGACTAATATTTACTTCTAAAGTGGGTGATCTCTAATTCAACGTATTCT
CTCTAGTATTCGATAATCATAAGCTCTCGTATTCGACGCTCTATTGTTTG
AtattattcgataaaaatctCATTCCCTTGAAAGTCCCTCTTCTGTGTCT
AATTAAAGTAACGGG
Run BLAST on NCBI

protein sequence of TCONS_00042284-protein

>TCONS_00042284-protein ID=TCONS_00042284-protein|Name=TCONS_00042284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
ASHDKDHPHPLSAEIIDMQFPMGEARYQKLMLERMLEISKCQEEIRSRLV
LLESGTAAGPSRAVSEKAKLLPRHPFTNVNDFEEWEKDLDNGQANQLTKE
FVRIGGKDKMALMRSCIDSLMDRTTQSKFNLAASVKRNIRKKKPFGNTKT
FKCLIGKFHASSI
Run BLAST on NCBI

transcript from alignment at sc0003327:10328..12501-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042284 ID=TCONS_00042284|Name=TCONS_00042284|organism=Clytia hemisphaerica|type=transcript|length=2174bp|location=Sequence derived from alignment at sc0003327:10328..12501- (Clytia hemisphaerica)
AGCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAAATCATTG
ACATGCAGTTCCCAATGGGTGAAGCAAGTGAGTAACTTTACATGCCTTAT
AGTTTGGCCTTAAACTTGTTATTTTAACTTTTATTTTTCGAGTAGGGACC
ATTCAAAAAATTTGTATGCTCAGTAGGATAAGGGTCAACCTGAAAGTATA
TAAAATATTCCTGTTGTGATTTAATCCTCTTTGATAATTTTATTTTCAGG
ATATCAAAAGCTCATGCTTGAGCGGATGCTTGAGATTTCAAAGTGTCAAG
AGGAAATCAGAAGTAGGCTTGTCCTGTTGGAGAGTGGTACTGCTGCTGGT
CCATCTCGAGCGGTGTCAGAGAAGGCAAAGTTATTACCCCGTCATCCTTT
CACCAACGTAAATGACTTTGAAGAATGGGAAAAAGATCTAGACAATGGTC
AAGCAAATCAATTAGTGAGTATTTCCTGATACACTCCTTTATCTATTTTT
TGTACACTTGCGTGCGTGTATGATCGGTTTCAAATACTTTAGGATTAGAT
TTTCCTTGATAAAAGGCCTAAATCTTTGAGAGACAAAGTTGAAGACGCAG
ACCATGGTTTTCAGTCTGAAAGAATAGCCCAATTTTTGGCAATAAAAGAT
TTAATATGTGCACATTTTGTTAAATTATAATCGAACCACACTTTTTCTGC
TAGACCAAAGAGTTTGTCAGAATTGGAGGCAAAGACAAGATGGCATTAAT
GCGTAGTTGCATCGATAGGTAATTTTGCAAAATAGTTTTGAAAAGTTTTT
AACAGAGAGACCGTTCAAAATTTGAACCAAAGTTTAATAAGCTATTCGTC
CTTTGGTCGAAATCATTATTAAACTTTGGCAGAATAAATGAATCGAAATT
GTTTCAGTGTGATGATCACAATTAAAGTCTTATGTTTGTAGATATGGAGA
CTGCAGCACAAATAGTAAAGATCTTATTTAGTTCTGTTCATGATTTTTCG
ACCAGACATTTTGAATAAAATCTCTGATTCATTGTATAAACTAAATAATA
ACACTATCTTTTTTAGTTTAATGGATCGAACAACCCAGTCAAAATTTAAC
TTGGCTGCTTCTGTTAAACGAAACATTCGAAAAAAGAAGCCGTTTGGCAA
CACAAAGACGTTCAAATGTCTGATTGGTAAGTTCCATGCTTCATCAATAT
AGTACGCACGCAGCGAACGGGGAACGTCATCTAACGTAACGTCGTTTCTA
AAGATAATTTGTAAGGTTTTTAAGGGAATGAGAATAGTGACTACTAATGA
CTTATTTTTTTGTTACATATGCAGGGCAAAAGTTATTCAGGAAGGTCAAT
TCCAAAGGCGTTGCGAAAGGCCCAACGCAGCAAGATCTGCGAACTTGCAT
TGGAAACGTCTTCAAGCATGCGAAGCCAGGAGAAGAGGAGAAGATCGACG
ACGATGAACCGGCGAACGACGAACGTGAACGTGAACGTGAACCGGTGAAC
GAAGAGACTTCCCCAAGTCTGTCGGGAAGCGGATCTGAAAGTGACGTTGA
ATCTGGGAAGAGGAAAAGGCAGCGTGTCATCAGTTCAAGCAGTGACGATG
ATGATCTTGATCGTTATTAAAGTCTATTTCACATTAGCTGTCAGTAAATT
TTGAAATGCTAATAACTTTTGATATACTTTGAGCTAGATAGCGATATCCT
TTGACTAAATGAATATTTTTCAAAAGTTTTTTCACAGTAATGATGTTCTA
AGATTCGAAAATCACCTTTGTAAAAATGGTGATTATATCACAATTCTACC
AGCAGTTGATATTTTTTCTTTTCCATTTTTCATCTTCATTTTCACAAATT
TTTCGAAATTTATTTTGTTGATAATATCCCACTCACGATTATCTTTTCAA
TGCGCGTAAAATCGCTATCTAGCTCGAAGTATATCAAAAGTTATGAGCAT
TTCAAAATTTACTGACAGCTAATATGAAATATACTTTAGGAACAAATTAG
GGATTATAACAGACTAATATTTACTTCTAAAGTGGGTGATCTCTAATTCA
ACGTATTCTCTCTAGTATTCGATAATCATAAGCTCTCGTATTCGACGCTC
TATTGTTTGATATTATTCGATAAAAATCTCATTCCCTTGAAAGTCCCTCT
TCTGTGTCTAATTAAAGTAACGGG

Coding sequence (CDS) from alignment at sc0003327:10328..12501-

>TCONS_00042284 ID=TCONS_00042284|Name=TCONS_00042284|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at sc0003327:10328..12501- (Clytia hemisphaerica)
TTTAATGGATCGAACAACCCAGTCAAAATTTAACTTGGCTGCTTCTGTTA
AACGAAACATTCGAAAAAAGAAGCCGTTTGGCAACACAAAGACGTTCAAA
TGTCTGATTGGTAAGTTCCATGCTTCATCAATATAGACCAAAGAGTTTGT
CAGAATTGGAGGCAAAGACAAGATGGCATTAATGCGTAGTTGCATCGATA
GGATATCAAAAGCTCATGCTTGAGCGGATGCTTGAGATTTCAAAGTGTCA
AGAGGAAATCAGAAGTAGGCTTGTCCTGTTGGAGAGTGGTACTGCTGCTG
GTCCATCTCGAGCGGTGTCAGAGAAGGCAAAGTTATTACCCCGTCATCCT
TTCACCAACGTAAATGACTTTGAAGAATGGGAAAAAGATCTAGACAATGG
TCAAGCAAATCAATTAGCTTCCCATGACAAGGACCATCCACATCCCTTGT
CAGCTGAAATCATTGACATGCAGTTCCCAATGGGTGAAGCAATTTAATGG
ATCGAACAACCCAGTCAAAATTTAACTTGGCTGCTTCTGTTAAACGAAAC
ATTCGAAAAAAGAAGCCGTTTGGCAACACAAAGACGTTCAAATGTCTGAT
TGGTAAGTTCCATGCTTCATCAATATAGACCAAAGAGTTTGTCAGAATTG
GAGGCAAAGACAAGATGGCATTAATGCGTAGTTGCATCGATAGGATATCA
AAAGCTCATGCTTGAGCGGATGCTTGAGATTTCAAAGTGTCAAGAGGAAA
TCAGAAGTAGGCTTGTCCTGTTGGAGAGTGGTACTGCTGCTGGTCCATCT
CGAGCGGTGTCAGAGAAGGCAAAGTTATTACCCCGTCATCCTTTCACCAA
CGTAAATGACTTTGAAGAATGGGAAAAAGATCTAGACAATGGTCAAGCAA
ATCAATTAGCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAA
ATCATTGACATGCAGTTCCCAATGGGTGAAGCAATTTAATGGATCGAACA
ACCCAGTCAAAATTTAACTTGGCTGCTTCTGTTAAACGAAACATTCGAAA
AAAGAAGCCGTTTGGCAACACAAAGACGTTCAAATGTCTGATTGGTAAGT
TCCATGCTTCATCAATATAGACCAAAGAGTTTGTCAGAATTGGAGGCAAA
GACAAGATGGCATTAATGCGTAGTTGCATCGATAGGATATCAAAAGCTCA
TGCTTGAGCGGATGCTTGAGATTTCAAAGTGTCAAGAGGAAATCAGAAGT
AGGCTTGTCCTGTTGGAGAGTGGTACTGCTGCTGGTCCATCTCGAGCGGT
GTCAGAGAAGGCAAAGTTATTACCCCGTCATCCTTTCACCAACGTAAATG
ACTTTGAAGAATGGGAAAAAGATCTAGACAATGGTCAAGCAAATCAATTA
GCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAAATCATTGA
CATGCAGTTCCCAATGGGTGAAGCAATTTAATGGATCGAACAACCCAGTC
AAAATTTAACTTGGCTGCTTCTGTTAAACGAAACATTCGAAAAAAGAAGC
CGTTTGGCAACACAAAGACGTTCAAATGTCTGATTGGTAAGTTCCATGCT
TCATCAATATAGACCAAAGAGTTTGTCAGAATTGGAGGCAAAGACAAGAT
GGCATTAATGCGTAGTTGCATCGATAGGATATCAAAAGCTCATGCTTGAG
CGGATGCTTGAGATTTCAAAGTGTCAAGAGGAAATCAGAAGTAGGCTTGT
CCTGTTGGAGAGTGGTACTGCTGCTGGTCCATCTCGAGCGGTGTCAGAGA
AGGCAAAGTTATTACCCCGTCATCCTTTCACCAACGTAAATGACTTTGAA
GAATGGGAAAAAGATCTAGACAATGGTCAAGCAAATCAATTAGCTTCCCA
TGACAAGGACCATCCACATCCCTTGTCAGCTGAAATCATTGACATGCAGT
TCCCAATGGGTGAAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026143XLOC_026143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042284-exon-sc0003327-1575043694:12425..12501TCONS_00042284-exon-sc0003327-1575043694:12425..12501Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1575043694:12038..12252TCONS_00042284-exon-sc0003327-1575043694:12038..12252Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1575043694:11734..11798TCONS_00042284-exon-sc0003327-1575043694:11734..11798Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1575043694:10328..11435TCONS_00042284-exon-sc0003327-1575043694:10328..11435Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1510915933:12425..12501TCONS_00042284-exon-sc0003327-1510915933:12425..12501Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1510915933:12038..12252TCONS_00042284-exon-sc0003327-1510915933:12038..12252Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1510915933:11734..11798TCONS_00042284-exon-sc0003327-1510915933:11734..11798Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1510915933:10328..11435TCONS_00042284-exon-sc0003327-1510915933:10328..11435Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1491911889:12425..12501TCONS_00042284-exon-sc0003327-1491911889:12425..12501Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1491911889:12038..12252TCONS_00042284-exon-sc0003327-1491911889:12038..12252Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1491911889:11734..11798TCONS_00042284-exon-sc0003327-1491911889:11734..11798Clytia hemisphaericaexon
TCONS_00042284-exon-sc0003327-1491911889:10328..11435TCONS_00042284-exon-sc0003327-1491911889:10328..11435Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042284-proteinTCONS_00042284-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003327supercontigsc0003327:10328..12501 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.410283	0	0.767777	0.847067	0	0	0	0	0	0	0.227655	0	0	0	0	0	0	0.347618	0	0	1.12468	0.483196	0	0.789061	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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