TCONS_00042282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042282
Unique NameTCONS_00042282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042282 ID=TCONS_00042282|Name=TCONS_00042282|organism=Clytia hemisphaerica|type=transcript|length=464bp
AAAGGCGTCACTGCTAACTTCAAAAAATTCGCACGAAGGTTTTAAATTAA
CTTTCTCCACTTTGCTTTGTACAGGGTTGTTGGTGGTCTAGAAGTTCTAA
CAGAAATCGAAAGCATCGAAACCGACTTCAAAACTGATAAACCAAAGGTA
CCAACCAATCACGTGTTATATTCCGAGACTCTGGAAATAGGACCAAGGCA
AGAGAATAGCAGAGACTAGATTCTaattttggctgaactttgctttttat
tacattttagaGTCCAGTCAGATAAACTTTCATATCCTAATTTGCACTAA
TTACATATTGTCATGGGCGGGCCGCTACGGCTCAATAAGTAGCTCCCGAC
AATTATCCTCAACAGCAATATTCATATTTGTCCCCGGATTAGTTCAGGAT
CCCAAGCTATTATTGGAAGAGAACCGGTTAGGTATTATAGAATTCAAAGC
ACGAGTAGTAGCAA
Run BLAST on NCBI

transcript from alignment at sc0003326:1..464

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042282 ID=TCONS_00042282|Name=TCONS_00042282|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at sc0003326:1..464 (Clytia hemisphaerica)
TTGCTACTACTCGTGCTTTGAATTCTATAATACCTAACCGGTTCTCTTCC
AATAATAGCTTGGGATCCTGAACTAATCCGGGGACAAATATGAATATTGC
TGTTGAGGATAATTGTCGGGAGCTACTTATTGAGCCGTAGCGGCCCGCCC
ATGACAATATGTAATTAGTGCAAATTAGGATATGAAAGTTTATCTGACTG
GACtctaaaatgtaataaaaagcaaagttcagccaaaattAGAATCTAGT
CTCTGCTATTCTCTTGCCTTGGTCCTATTTCCAGAGTCTCGGAATATAAC
ACGTGATTGGTTGGTACCTTTGGTTTATCAGTTTTGAAGTCGGTTTCGAT
GCTTTCGATTTCTGTTAGAACTTCTAGACCACCAACAACCCTGTACAAAG
CAAAGTGGAGAAAGTTAATTTAAAACCTTCGTGCGAATTTTTTGAAGTTA
GCAGTGACGCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026141XLOC_026141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042282-exon-sc0003326-1491911889:1..464TCONS_00042282-exon-sc0003326-1491911889:1..464Clytia hemisphaericaexon
TCONS_00042282-exon-sc0003326-1510915933:1..464TCONS_00042282-exon-sc0003326-1510915933:1..464Clytia hemisphaericaexon
TCONS_00042282-exon-sc0003326-1575043694:1..464TCONS_00042282-exon-sc0003326-1575043694:1..464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003326supercontigsc0003326:1..464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.454691	0	1.8013	0.889571	1.43097	2.29251	4.54716	3.34146	2.27036	4.10205	4.45297	3.47743	0	0	0	0	0	0	0	0.196838	0.170629	0	1.34438	1.59977	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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