TCONS_00042281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042281
Unique NameTCONS_00042281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042281 ID=TCONS_00042281|Name=TCONS_00042281|organism=Clytia hemisphaerica|type=transcript|length=207bp
TTCAAAAGACGTGTGAAAACTTCATCAAACATTGTCAAAGCGGATATTAT
GATAACACAGTTTTCCACCGCCTTATCAAGCATTTCATGGTGCAAGGAGG
CGATCCTACCGGCACAGGAACAGGTGGTGAGTCAATATGGGGTGAAAAAT
TCAAGGACgaattcaaatcaaatcttaCACACTCAGGACGAGGCGTTCTA
TCTATGG
Run BLAST on NCBI

transcript from alignment at sc0003326:1026..2556-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042281 ID=TCONS_00042281|Name=TCONS_00042281|organism=Clytia hemisphaerica|type=transcript|length=1531bp|location=Sequence derived from alignment at sc0003326:1026..2556- (Clytia hemisphaerica)
TTCAAAAGACGTGTGAAAACTTCATCAAACATTGTCAAAGCGGATATTAT
GATAACACAGGTATGATTCAATTATAATTGAAATCTCTATAATATTATAA
AAGGTTGGTCTCAGTCGCATATTCTCAAACTCCCGTGAAGTGTTAAGCTG
TGCGACCCCTTACAATTTGGGTAACTAATACTCAAAAAGCTTCAGCTGCT
TTCCATAGTACGTCAATTCAACCTTTATTTTCTTGAAAGATATTTCTTGA
GATATAAGATCAACTTATTAGAATAATTGCTAATTTAGCGATATTGGTAA
TTTGAATAAAATTTTGTGAGACAGTCTATGGTTCTGAGAGACTTTACGTG
CAGGAGTGTCAACGTTTGGACTTTGGCCACCTACACACCTTATATTTGGT
TTGTTTTTTTCTCTTGTTTAAATCAAATAACATTTACTTATTTCATTGGT
ATAGTTTTCCACCGCCTTATCAAGCATTTCATGGTGCAAGGAGGCGATCC
TACCGGCACAGGAACAGGTAATCTCTTTGTATTTATAAGATTGTTTTCTT
TGCAAATTGGGTCTGTTGCAACCACTGACCTGTGTTTGAACTCTGGACTA
AGTTTTTTCTACTGTTTTGATCGGTTTTTTTAGAAATTATTTACTTATGA
AACCAATACTCGATGTGGATCGATTCATTCTTTTTCTTTGTGCGGGCTGC
AAAATTATGGCAGTGCAGTCAAAACATGTGATAACTCAAAAAGTTTACGT
GATTTCTCTCCCATGTTACTTGTTTTACAACTAACAGTTAATTTACTTTA
TTACTGTTGATAAATTCACACCAACCAGAAATGAAGGTCATAAGACCCAA
AAGCATAAAATTTTGAGCAAAAGCGTGATTTGACATCAGCCTTTAATTTT
ACAATCCGTGTATTGAGCCATATCAAGTAGCGATACATTCAGGGTGACAA
CACTGATGCAAAATTTTGGTCCGTCGAGATTGAGAAAGTGCCACCAACGT
TATATATAAAACTTAAAACTTAGTTGTCGAGGGTAGGGATGCTGCAAGGA
TCGCTAAGCGGAAAAATTGTATTTTTCGTGTTCTTATTTATAGGGTGAAA
TTGAGGTATTTCAGGCTTTCAACCCAATTTTTACTACTTTGACCCGTAAA
TTGCTTGAAATTGAGTAATTTTAGGCTCAGCATTGTTCTTAAATTGTTCT
TTATAAAATTGTTCTCATAAAAAAAAGAGTAACTCGAAATGTAGAAACCT
TGGCATAAGAAGGCGATATGATTTATATTCTCATTCAATACTGATTTAGG
TGGTGAGTCAATATGGGGTGAAAAATTCAAGGACGAATTCAAATCAAATC
TTACACACTCAGGTAAAAAAATGATTTATGCTTAGATTTATTTGAATTTC
CTTCGCTGTCCGTTGAATTGGTTTCTTTTCCCTCGATATATTGTTTTAAA
ACCAAAACCTTTTGATTTGATGTCACCCCGTCGTTCGAAAGTTACTCTTT
TCTTATTTAGGACGAGGCGTTCTATCTATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026140XLOC_026140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042281-exon-sc0003326-1575043694:2497..2556TCONS_00042281-exon-sc0003326-1575043694:2497..2556Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1575043694:2040..2102TCONS_00042281-exon-sc0003326-1575043694:2040..2102Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1575043694:1195..1257TCONS_00042281-exon-sc0003326-1575043694:1195..1257Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1575043694:1026..1046TCONS_00042281-exon-sc0003326-1575043694:1026..1046Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1510915933:2497..2556TCONS_00042281-exon-sc0003326-1510915933:2497..2556Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1510915933:2040..2102TCONS_00042281-exon-sc0003326-1510915933:2040..2102Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1510915933:1195..1257TCONS_00042281-exon-sc0003326-1510915933:1195..1257Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1510915933:1026..1046TCONS_00042281-exon-sc0003326-1510915933:1026..1046Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1491911889:2497..2556TCONS_00042281-exon-sc0003326-1491911889:2497..2556Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1491911889:2040..2102TCONS_00042281-exon-sc0003326-1491911889:2040..2102Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1491911889:1195..1257TCONS_00042281-exon-sc0003326-1491911889:1195..1257Clytia hemisphaericaexon
TCONS_00042281-exon-sc0003326-1491911889:1026..1046TCONS_00042281-exon-sc0003326-1491911889:1026..1046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003326supercontigsc0003326:1026..2556 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.60526	1.93668	1.8131	0	1.65518	0	0	1.15075	4.1617	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00042281 vs. Swiss-Prot (Human)
Match: PPIL2 (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo sapiens GN=PPIL2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.914e-21
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = 3 
Query:    6 KTCENFIKHCQSGYYDNTVFHRLIKHFMVQXXXXXXXXXXXESIWGEKFKDEFKSNLTHSGRGVLSM 206
            KTCENFI+ C+  YYD T+FHR I++F++QGGDPTGTGTGGES WG+ FKDEF+ NL+H+GRG+LSM
Sbjct:  302 KTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSM 368
The following BLAST results are available for this feature:
BLAST of TCONS_00042281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIL24.914e-2170.15Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo... [more]
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