TCONS_00042279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042279
Unique NameTCONS_00042279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042279 ID=TCONS_00042279|Name=TCONS_00042279|organism=Clytia hemisphaerica|type=transcript|length=367bp
GCAGTGAATATTAGGCTTTAGCCAAAGTTCAGAGCGCTTTAATTAAAAGA
GTTGTTAGCTTTAAGTGAAAATAAAGGAGTTTTAAAAATGCCAAAATTAA
CAAGAAAGAAATGTTAAAGAAAACCATCCTTAAAACTGAAAGTTACAAAT
GTCTACttagtcaaaagaaaaaaatactaaCTTGAGTAAATGTAAAATAG
CtaaacatttgaaggcttcaaCTTAAATAATTTGTTTACACACCAAAGCA
CAAAAGCTAGATGTGGAAGCTTCAAAAAGATAACCTCATATTCAGATGGT
GTTATTTCAAAGCTCTAAAGAAGCAATGAAAATACACCATCTGACAAATT
TGGTTTGTGGTTTGTGC
Run BLAST on NCBI

transcript from alignment at sc0003325:7573..7939

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042279 ID=TCONS_00042279|Name=TCONS_00042279|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0003325:7573..7939 (Clytia hemisphaerica)
GCACAAACCACAAACCAAATTTGTCAGATGGTGTATTTTCATTGCTTCTT
TAGAGCTTTGAAATAACACCATCTGAATATGAGGTTATCTTTTTGAAGCT
TCCACATCTAGCTTTTGTGCTTTGGTGTGTAAACAAATTATTTAAGttga
agccttcaaatgtttaGCTATTTTACATTTACTCAAGttagtattttttt
cttttgactaaGTAGACATTTGTAACTTTCAGTTTTAAGGATGGTTTTCT
TTAACATTTCTTTCTTGTTAATTTTGGCATTTTTAAAACTCCTTTATTTT
CACTTAAAGCTAACAACTCTTTTAATTAAAGCGCTCTGAACTTTGGCTAA
AGCCTAATATTCACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026138XLOC_026138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042279-exon-sc0003325-1491911889:7573..7939TCONS_00042279-exon-sc0003325-1491911889:7573..7939Clytia hemisphaericaexon
TCONS_00042279-exon-sc0003325-1510915933:7573..7939TCONS_00042279-exon-sc0003325-1510915933:7573..7939Clytia hemisphaericaexon
TCONS_00042279-exon-sc0003325-1575043694:7573..7939TCONS_00042279-exon-sc0003325-1575043694:7573..7939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003325supercontigsc0003325:7573..7939 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.248733	0	0	0	0	0.189218	0	0.909967	0	0	0	0.765016	1.77879	0	0.172772	0	0	0.217101	0	0	0.234065	0	0	0	0	1.49535	1.2696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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