TCONS_00042277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042277
Unique NameTCONS_00042277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1117

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042277 ID=TCONS_00042277|Name=TCONS_00042277|organism=Clytia hemisphaerica|type=transcript|length=1117bp
GGTGCAATTAAGTGCTCAATTGTGGTTGTTTACTTATCGAGTTTTCACAA
CTGTTTAATTGTTTATTCTTCTCTGGATTTTAGTTCGTACACTGATATGA
CTTCATATCCTCACTGTTTGACAAGTGACGTTCTCGTCACTAAATTAAAA
CATAACATAATCGGTATATCCTGGACTGCATTTCATCTTCGCAGGTCTTC
AAGTTGTTTTCATTGTTGATGTCGGTTCTTTATATATCAAATTTTACGTA
TAGTTAACAATTTCTAAtgctgaaatattttatttgaaaacaactAAATT
ACAAATTATCGTCTGATTCATAAATATTACATAAACTCATCTcttaaaaa
tgtcataaaatcaaTAAACTATTTGTCCAATTTCAGTTTCTCTTTTAACA
TTTCAGTCTTTAGGTAATTGTTAGTTTCATTCGGTAAACATATCTGCATT
CTATTCGACATCTCGGAATTTATTCAACAATTTCTCTGCGCTAAATTTTG
TCTTGGTTGTAGTCAGTTAACTGTCCTTCTCAATGTACGCAATTTTGACT
CGATATAACTATTTTTTCTGGTTTGGTGCTCTGTGCAGCTCTTTAAATAT
TCGTGTTTCATTAAATATCAACTTTATCAAGCATGGTTAAGTATTGAGTA
CTCAACACAATGAACgaagtttatttttgtttctgggATAAATttgttgt
ttttcagaAATTCTTTTCTTGTACTCGTAGATCTTTCGGTTGTGCCATTG
GTTTTTCTGGTCGTATATTTTATCATCGTTGAGAATTCTCTCACTGATTT
CTGGTTGCTGCCGGCTCTTCACTTGGTATTGTATATGTAAGATTTATCAA
CGATATGATATTCATAATCAGGATGTACAACGTTGGTAAGATTATTTTCA
GTAGCAGACTCAGTTGTATCTTGCTTCTGCTTCGATTTATCTGGTATTTT
CGGCATTTCAGTTGAAACCTCATACATTCTGTCGACTGTTTTGTGGATAT
TTGAACACTCTCGTATGATTTCGGAATATTATTGGACGGGTGTTCAATAT
TCTTGGACGGCTCTTGAACACTACAACATGGATTTTTAATACTCTCGGTT
GGCTTCTTCATAATATC
Run BLAST on NCBI

transcript from alignment at sc0003324:10374..12403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042277 ID=TCONS_00042277|Name=TCONS_00042277|organism=Clytia hemisphaerica|type=transcript|length=2030bp|location=Sequence derived from alignment at sc0003324:10374..12403- (Clytia hemisphaerica)
GGTGCAATTAAGTGCTCAATTGTGGTTGTTTACTTATCGAGTTTTCACAA
CTGTTTAATTGTTTATTCTTCTCTGGATTTTAGTTCGTACACTGATATGA
CTTCATATCCTCACTGTTTGACAAGTGACGTTCTCGTCACTAAATTAAAA
CATAACATAATCGGTATATCCTGGACTGCATTTCATCTTCGCAGGTCTTC
AAGTTGTTTTCATTGTTGATGTCGGTTCTTTATATATCAAATTTTACGTA
TAGTTAACAATTTCTAATGCTGAAATATTTTATTTGAAAACAACTAAATT
ACAAATTATCGTCTGATTCATAAATATTACATAAACTCATCTCTTAAAAA
TGTCATAAAATCAATAAACTATTTGTCCAATTTCAGTTTCTCTTTTAACA
TTTCAGTCTTTAGGTAATTGTTAGTTTCATTCGGTAAACATATCTGCATT
CTATTCGACATCTCGGAATTTATTCAACAATTTCTCTGCGCTAAATTTTG
TCTTGGTTGTAGTCAGTTAACTGTCCTTCTCAATGTACGCAATTTTGACT
CGATATAACTATTTTTTCTGGTTTGGTGCTCTGTGCAGCTCTTTAAATAT
TCGTGTTTCATTAAATATCAACTTTATCAAGCATGGTTAAGTATTGAGTA
CTCAACACAATGAACGAAGTTTATTTTTGTTTCTGGGATAAATTTGTTGT
TTTTCAGAAATTCTTTTCTTGTACTCGTAGATCTTTCGGTTGTGCCATTG
GTTTTTCTGGTCGTATATTTTATCATCGTTGAGAATTCTCTCACTGATTT
CTGGTTGCTGCCGGCTCTTCACTTGGTATTGTATATGTAAGATTTATCAA
CGATATGATATTCATAATCAGGATGTACAACGTTGGTAAGATTATTTTCA
GTAGCAGACTCAGTTGTATCTTGCTTCTGCTTCGATTTATCTGGTATTTT
CGGCATTTCAGTTGAAACCTCATACATTCTGTCGACTGTTTTGTGGATAT
TTGAACACTCTCGTATGATTTCGGAATATTATTGGACGGGTGTTCAATAT
TCTTGGACGGCTCTTGAACACTACAACATGGATTTTTAATACTCTCAATT
GGCTTCTTCATAATATCGGATGGTCTTTCGATAATATCGGTCGGTTTTTC
AACAACTTCGGACGGCTTTTTGACAATTTCGGACGGCTTTTTAACAGTCT
CGGACGGCTTTTTGACAATCTCGGACGGCTTTTTGACAATCTCGGATGAC
TTTTTGACAATCTCGGATGACTTTTTGACACTCTCGGACGGCTTTTTGAC
AATCTCAGATGACTTTTTAACAATTATGGACGGCTTTTTGACAATCTCGG
ACGGCTTTTTAACAATCTTGGACGGCTTTACAATATTCTCGGACTGGGTT
ATTCTGGAAGACTTTTCAATATTCTTGGACAGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACAATCTCGGACGGC
TTTTTAACAATCTTGGACGGCTTTACAATATTCTCGGACTGGGTTATTCT
GGAAGACTTTTCAATATTCTTGGACAGTTTTTTCTTAATTTCTGACAAAT
GCTGTGAATTATTTGGTGGCTGATGGATAACCTTGGAGGGGGTTTGAATA
ATTCTAGATGAATGTTGAATCATTTCTTGTGATTTCTTTAGCGAAAGATG
GCATATCTTTGGAGACAGGTTTGTAATCCTTGACAACGAGTGAAGTTTTG
ACGGTTCATAAACAATTTTGCTCGATGAGTGAAATTTCGGCGGTTGTTGA
CATGTTATACGTGGTCGGCGAATAATCTTTGGTGGTCGGTAATGAACTTT
CGGTGGTGAGTGAACTNATTTCAGTTGAAACCTCATACATTCTGTCGACT
GTTTTGTGGATATTTGAACACTCTCGTATGATTTCGGAATATTATTGGAC
GGGTGTTCGATATTCTTGGACGGCTCTTGAACACTACAACATGGATTTTT
AATACTCTCGGTTGGCTTCTTCATAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026136XLOC_026136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042277-exon-sc0003324-1575043694:11327..12403TCONS_00042277-exon-sc0003324-1575043694:11327..12403Clytia hemisphaericaexon
TCONS_00042277-exon-sc0003324-1575043694:10374..10413TCONS_00042277-exon-sc0003324-1575043694:10374..10413Clytia hemisphaericaexon
TCONS_00042277-exon-sc0003324-1510915933:11327..12403TCONS_00042277-exon-sc0003324-1510915933:11327..12403Clytia hemisphaericaexon
TCONS_00042277-exon-sc0003324-1510915933:10374..10413TCONS_00042277-exon-sc0003324-1510915933:10374..10413Clytia hemisphaericaexon
TCONS_00042277-exon-sc0003324-1491911889:11327..12403TCONS_00042277-exon-sc0003324-1491911889:11327..12403Clytia hemisphaericaexon
TCONS_00042277-exon-sc0003324-1491911889:10374..10413TCONS_00042277-exon-sc0003324-1491911889:10374..10413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003324supercontigsc0003324:10374..12403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163879	0	0.146003	0	0	0	0	0.112382	0	0.0462512	0.195785	0	0.825975	1.08796	0.7645	0.645858	0.411619	0.278059	0.285573	0.142212	0.248679	0.81689	0.0369345	0.15042	0	0	1.19344	1.7495	3.07878	3.43105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top