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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042276 ID=TCONS_00042276|Name=TCONS_00042276|organism=Clytia hemisphaerica|type=transcript|length=2023bp
TGAAGAAGCCAACCGAGAGTATTAAAAATCCATGTTGTAGTGTTCAAGAG
CCGTCCAAGAATATCGAACACCCGTCCAATAATATTCCGAAATCATACGA
GAGTGTTCAAATATCCACAAAACAGTCGACAGAATGTATGAGGTTTCAAC
TGAAATNAGTTCACTCACCACCGAAAGTTCATTACCGACCACCAAAGATT
ATTCGCCGACCACGTATAACATGTCAACAACCGCCGAAATTTCACTCATC
GAGCAAAATTGTTTATGAACCGTCAAAACTTCACTCGTTGTCAAGGATTA
CAAACCTGTCTCCAAAGATATGCCATCTTTCGCTAAAGAAATCACAAGAA
ATGATTCAACATTCATCTAGAATTATTCAAACCCCCTCCAAGGTTATCCA
TCAGCCACCAAATAATTCACAGCATTTGtcagaaattaagaaaaaactGT
CCAAGAATATTGAAAAGTCTTCCAGAATAACCCAGTCCGAGAATATTGTA
AAGCCGTCCAAGATTGTTAAAAAGCCGTCCGAGATTGTCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTCCAAG
AATATTGAAAAGTCTTCCAGAATAACCCAGTCCGAGAATATTGTAAAGCC
GTCCAAGATTGTTAAAAAGCCGTCCGAGATTGTCAAAAAGCCGTCCataa
ttgttaaaaagtcaTCTGAGATTGTCAAAAAGCCGTCCGAGAGTGTCAAA
AAGTCATCCGAGATTGTCAAAAAGTCATCCGAGATTGTCAAAAAGCCGTC
CGAGATTGTCAAAAAGCCGTCCGAGACTGTTAAAAAGCCGTCCGAAATTG
TCAAAAAGCCGTCCGAAGTTGTTGAAAAACCGACCGATATTATCGAAAGA
CCATCCGATATTATGAAGAAGCCAATTGAGAGTATTAAAAATCCATGTTG
TAGTGTTCAAGAGCCGTCCAAGAATATTGAACACCCGTCCAATAATATTC
CGAAATCATACGAGAGTGTTCAAATATCCACAAAACAGTCGACAGAATGT
ATGAGGTTTCAACTGAAATGCCGAAAATACCAGATAAATCGAAGCAGAAG
CAAGATACAACTGAGTCTGCTACTGAAAATAATCTTACCAACGTTGTACA
TCCTGATTATGAATATCATATCGTTGATAAATCTTACATATACAATACCA
AGTGAAGAGCCGGCAGCAACCAGAAATCAGTGAGAGAATTCTCAACGATG
ATAAAATATACGACCAGAAAAACCAATGGCACAACCGAAAGATCTACGAG
TACAAGAAAAGAATTtctgaaaaacaacaaATTTATcccagaaacaaaaa
taaacttcGTTCATTGTGTTGAGTACTCAATACTTAACCATGCTTGATAA
AGTTGATATTTAATGAAACACGAATATTTAAAGAGCTGCACAGAGCACCA
AACCAGAAAAAATAGTTATATCGAGTCAAAATTGCGTACATTGAGAAGGA
CAGTTAACTGACTACAACCAAGACAAAATTTAGCGCAGAGAAATTGTTGA
ATAAATTCCGAGATGTCGAATAGAATGCAGATATGTTTACCGAATGAAAC
TAACAATTACCTAAAGACTGAAATGTTAAAAGAGAAACTGAAATTGGACA
AATAGTTTAttgattttatgacatttttaagAGATGAGTTTATGTAATAT
TTATGAATCAGACGATAATTTGTAATTTagttgttttcaaataaaatatt
tcagcaTTAGAAATTGTTAACTATACGTAAAATTTGATATATAAAGAACC
GACATCAACAATGAAAACAACTTGAAGACCTGCGAAGATGAAATGCAGTC
CAGGATATACCGATTATGTTATGTTTTAATTTAGTGACGAGAACGTCACT
TGTCAAACAGTGAGGATATGAAGTCATATCAGTGTACGAACTAAAATCCA
GAGAAGAATAAACAATTAAACAGTTGTGAAAACTCGATAAGTAAACAACC
ACAATTGAGCACTTAATTGCACC Run BLAST on NCBI transcript from alignment at sc0003324:10381..12403+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042276 ID=TCONS_00042276|Name=TCONS_00042276|organism=Clytia hemisphaerica|type=transcript|length=2023bp|location=Sequence derived from alignment at sc0003324:10381..12403+ (Clytia hemisphaerica)
TGAAGAAGCCAACCGAGAGTATTAAAAATCCATGTTGTAGTGTTCAAGAG
CCGTCCAAGAATATCGAACACCCGTCCAATAATATTCCGAAATCATACGA
GAGTGTTCAAATATCCACAAAACAGTCGACAGAATGTATGAGGTTTCAAC
TGAAATNAGTTCACTCACCACCGAAAGTTCATTACCGACCACCAAAGATT
ATTCGCCGACCACGTATAACATGTCAACAACCGCCGAAATTTCACTCATC
GAGCAAAATTGTTTATGAACCGTCAAAACTTCACTCGTTGTCAAGGATTA
CAAACCTGTCTCCAAAGATATGCCATCTTTCGCTAAAGAAATCACAAGAA
ATGATTCAACATTCATCTAGAATTATTCAAACCCCCTCCAAGGTTATCCA
TCAGCCACCAAATAATTCACAGCATTTGtcagaaattaagaaaaaactGT
CCAAGAATATTGAAAAGTCTTCCAGAATAACCCAGTCCGAGAATATTGTA
AAGCCGTCCAAGATTGTTAAAAAGCCGTCCGAGATTGTCANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTCCAAG
AATATTGAAAAGTCTTCCAGAATAACCCAGTCCGAGAATATTGTAAAGCC
GTCCAAGATTGTTAAAAAGCCGTCCGAGATTGTCAAAAAGCCGTCCataa
ttgttaaaaagtcaTCTGAGATTGTCAAAAAGCCGTCCGAGAGTGTCAAA
AAGTCATCCGAGATTGTCAAAAAGTCATCCGAGATTGTCAAAAAGCCGTC
CGAGATTGTCAAAAAGCCGTCCGAGACTGTTAAAAAGCCGTCCGAAATTG
TCAAAAAGCCGTCCGAAGTTGTTGAAAAACCGACCGATATTATCGAAAGA
CCATCCGATATTATGAAGAAGCCAATTGAGAGTATTAAAAATCCATGTTG
TAGTGTTCAAGAGCCGTCCAAGAATATTGAACACCCGTCCAATAATATTC
CGAAATCATACGAGAGTGTTCAAATATCCACAAAACAGTCGACAGAATGT
ATGAGGTTTCAACTGAAATGCCGAAAATACCAGATAAATCGAAGCAGAAG
CAAGATACAACTGAGTCTGCTACTGAAAATAATCTTACCAACGTTGTACA
TCCTGATTATGAATATCATATCGTTGATAAATCTTACATATACAATACCA
AGTGAAGAGCCGGCAGCAACCAGAAATCAGTGAGAGAATTCTCAACGATG
ATAAAATATACGACCAGAAAAACCAATGGCACAACCGAAAGATCTACGAG
TACAAGAAAAGAATTtctgaaaaacaacaaATTTATcccagaaacaaaaa
taaacttcGTTCATTGTGTTGAGTACTCAATACTTAACCATGCTTGATAA
AGTTGATATTTAATGAAACACGAATATTTAAAGAGCTGCACAGAGCACCA
AACCAGAAAAAATAGTTATATCGAGTCAAAATTGCGTACATTGAGAAGGA
CAGTTAACTGACTACAACCAAGACAAAATTTAGCGCAGAGAAATTGTTGA
ATAAATTCCGAGATGTCGAATAGAATGCAGATATGTTTACCGAATGAAAC
TAACAATTACCTAAAGACTGAAATGTTAAAAGAGAAACTGAAATTGGACA
AATAGTTTAttgattttatgacatttttaagAGATGAGTTTATGTAATAT
TTATGAATCAGACGATAATTTGTAATTTagttgttttcaaataaaatatt
tcagcaTTAGAAATTGTTAACTATACGTAAAATTTGATATATAAAGAACC
GACATCAACAATGAAAACAACTTGAAGACCTGCGAAGATGAAATGCAGTC
CAGGATATACCGATTATGTTATGTTTTAATTTAGTGACGAGAACGTCACT
TGTCAAACAGTGAGGATATGAAGTCATATCAGTGTACGAACTAAAATCCA
GAGAAGAATAAACAATTAAACAGTTGTGAAAACTCGATAAGTAAACAACC
ACAATTGAGCACTTAATTGCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042276-exon-sc0003324-1491911889:10381..12403 | TCONS_00042276-exon-sc0003324-1491911889:10381..12403 | Clytia hemisphaerica | exon |
| TCONS_00042276-exon-sc0003324-1510915933:10381..12403 | TCONS_00042276-exon-sc0003324-1510915933:10381..12403 | Clytia hemisphaerica | exon |
| TCONS_00042276-exon-sc0003324-1575043694:10381..12403 | TCONS_00042276-exon-sc0003324-1575043694:10381..12403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003324 | supercontig | sc0003324:10381..12403 + |
Blast
The following BLAST results are available for this feature:
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