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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042270 ID=TCONS_00042270|Name=TCONS_00042270|organism=Clytia hemisphaerica|type=transcript|length=1627bp
atttttttagcgaTGAAAGATTTTTCAGAGAAAAGTACAAGCAAATTTCT
TGGAAATACAAGcatttgataacttttgactgcTGTTTGCTTCAAGGATG
GCTGAACCTGGGTATTTTAATGATGACCTTGATGAAGTACTGATAAGTTT
CATTCCTGATGAACTAGTCAAGTCAATAAAGAATGGCACTGATCAAAATC
TCAACCTGGTCCATACTGGAATTTGTGATAAAATCAATGATGCAACCAAG
AAAATTCCAAACATAGTTCTAAAACTGTCTGCTGATGATGTACAAGAAAA
GTCTGAAAAATTGTGGAAGAGTGCTCTCAGCTGTTTACAAGACGACAGAT
CATTTTTTATTGGTGATCAATGTACTATTCAAAAACGAAAATGTACTCTG
AATAACTTGATTGCcaatttatcagtttttcaagaACAATTCAAAACAAT
CCTACTAAAAATTTACGAGATGGTAGAACTATGCTTACCAACTACACCTT
TGATTTCAGAAGGAAGAAGATTGATGTGGCAAAAGTTTTATACGTATATT
TCCTCTGAACAATGTACAATTGACTGGATACCGTTACGCCAAATCTCAAC
AGTAGCAAACTTTGACTTAATTGTGTATAAGTTGTCTTCTAAATTGTTAG
AATTATTGATCACTGAAAACATAGAATCGTATCTATCACTGCATGAAGAG
TCAACAACATCAATACCAATGGGAGAAAAGATGGATGATAGAGAACAGAA
CATTGTTAAGTATGTTGCAGGCTTTATTGCACATTCTGcaacaaaatatt
ataaaaaaagggaAGAGGGGGAAAAATTTGTTGATGCCATCAAAACGTGG
AGCATCAAAACACGTGAAGCCAAGTGCTTTGAGTTTAAAGACAAGTGGGT
TGACTTACAGAATAGAGGTGGACTGGTGGATGTCAATGACAATTGCTTTT
TGTTTTTTCGTACCGTGGAATATTCAGTGAGAGATGTCTTTAATCCTGTC
ACACTGAATAACTATGcaggtgaaaatttgaaaaaggttatccaagaaaa
aatttacaagCGAAAGTATCTCATATATAGATGGGATGAATTAATGAAAG
GTGATAACTTGGAATCCTTTGAGAAGGAAAACCTTTTCAAATTGGTGATA
GCTCGATGGATTGACATTCGTGGAAAGGCATTTGTCAGAGCTTGGGTTGA
TGGTCTTAGAAGTCAGTATAAAGATAAGGTTTCAGAGAAAGGGGAACATT
CTCATAGAAAGCAGCTGAATGCAAAAAAGAGcacaaaatctaaatctaaa
tctAGTAAGTAAATTTCAATCCATTAACCCATACCTCCATACCTCCTTCT
GCTTGAAGGATTTGTCAATCtgtttatttaaattttttgtgaaattcttg
TTTAGGAAGGAGAAAATCTAAAAAGCACAAAGAGAATGTCATGAAATAAT
ACGTTAGCTTTAGAATGCAGTGCTCTTTTTAGTACTCTTGTTTTCAGTCC
TGAATGTCAGGCGTAATGTCTATCCTCCGTTCAAAAAGTGTTCACTACAC
TTATACAAACACCTGATAAAGAGAAAAAGTTGgtcatatttaaaaattgg
GAATAACgtagattttattattttcct Run BLAST on NCBI protein sequence of TCONS_00042270-protein >TCONS_00042270-protein ID=TCONS_00042270-protein|Name=TCONS_00042270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MAEPGYFNDDLDEVLISFIPDELVKSIKNGTDQNLNLVHTGICDKINDAT
KKIPNIVLKLSADDVQEKSEKLWKSALSCLQDDRSFFIGDQCTIQKRKCT
LNNLIANLSVFQEQFKTILLKIYEMVELCLPTTPLISEGRRLMWQKFYTY
ISSEQCTIDWIPLRQISTVANFDLIVYKLSSKLLELLITENIESYLSLHE
ESTTSIPMGEKMDDREQNIVKYVAGFIAHSATKYYKKREEGEKFVDAIKT
WSIKTREAKCFEFKDKWVDLQNRGGLVDVNDNCFLFFRTVEYSVRDVFNP
VTLNNYAGENLKKVIQEKIYKRKYLIYRWDELMKGDNLESFEKENLFKLV
IARWIDIRGKAFVRAWVDGLRSQYKDKVSEKGEHSHRKQLNAKKSTKSKS
KSSK Run BLAST on NCBI transcript from alignment at sc0003323:160..1786 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042270 ID=TCONS_00042270|Name=TCONS_00042270|organism=Clytia hemisphaerica|type=transcript|length=1627bp|location=Sequence derived from alignment at sc0003323:160..1786 (Clytia hemisphaerica)
aggaaaataataaaatctacGTTATTCccaatttttaaatatgacCAACT
TTTTCTCTTTATCAGGTGTTTGTATAAGTGTAGTGAACACTTTTTGAACG
GAGGATAGACATTACGCCTGACATTCAGGACTGAAAACAAGAGTACTAAA
AAGAGCACTGCATTCTAAAGCTAACGTATTATTTCATGACATTCTCTTTG
TGCTTTTTAGATTTTCTCCTTCCTAAAcaagaatttcacaaaaaatttaa
ataaacaGATTGACAAATCCTTCAAGCAGAAGGAGGTATGGAGGTATGGG
TTAATGGATTGAAATTTACTTACTagatttagatttagattttgtgCTCT
TTTTTGCATTCAGCTGCTTTCTATGAGAATGTTCCCCTTTCTCTGAAACC
TTATCTTTATACTGACTTCTAAGACCATCAACCCAAGCTCTGACAAATGC
CTTTCCACGAATGTCAATCCATCGAGCTATCACCAATTTGAAAAGGTTTT
CCTTCTCAAAGGATTCCAAGTTATCACCTTTCATTAATTCATCCCATCTA
TATATGAGATACTTTCGcttgtaaattttttcttggataacctttttcaa
attttcacctgCATAGTTATTCAGTGTGACAGGATTAAAGACATCTCTCA
CTGAATATTCCACGGTACGAAAAAACAAAAAGCAATTGTCATTGACATCC
ACCAGTCCACCTCTATTCTGTAAGTCAACCCACTTGTCTTTAAACTCAAA
GCACTTGGCTTCACGTGTTTTGATGCTCCACGTTTTGATGGCATCAACAA
ATTTTTCCCCCTCTtccctttttttataatattttgttgCAGAATGTGCA
ATAAAGCCTGCAACATACTTAACAATGTTCTGTTCTCTATCATCCATCTT
TTCTCCCATTGGTATTGATGTTGTTGACTCTTCATGCAGTGATAGATACG
ATTCTATGTTTTCAGTGATCAATAATTCTAACAATTTAGAAGACAACTTA
TACACAATTAAGTCAAAGTTTGCTACTGTTGAGATTTGGCGTAACGGTAT
CCAGTCAATTGTACATTGTTCAGAGGAAATATACGTATAAAACTTTTGCC
ACATCAATCTTCTTCCTTCTGAAATCAAAGGTGTAGTTGGTAAGCATAGT
TCTACCATCTCGTAAATTTTTAGTAGGATTGTTTTGAATTGTtcttgaaa
aactgataaattgGCAATCAAGTTATTCAGAGTACATTTTCGTTTTTGAA
TAGTACATTGATCACCAATAAAAAATGATCTGTCGTCTTGTAAACAGCTG
AGAGCACTCTTCCACAATTTTTCAGACTTTTCTTGTACATCATCAGCAGA
CAGTTTTAGAACTATGTTTGGAATTTTCTTGGTTGCATCATTGATTTTAT
CACAAATTCCAGTATGGACCAGGTTGAGATTTTGATCAGTGCCATTCTTT
ATTGACTTGACTAGTTCATCAGGAATGAAACTTATCAGTACTTCATCAAG
GTCATCATTAAAATACCCAGGTTCAGCCATCCTTGAAGCAAACAgcagtc
aaaagttatcaaatgCTTGTATTTCCAAGAAATTTGCTTGTACTTTTCTC
TGAAAAATCTTTCAtcgctaaaaaaat Coding sequence (CDS) from alignment at sc0003323:160..1786 >TCONS_00042270 ID=TCONS_00042270|Name=TCONS_00042270|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0003323:160..1786 (Clytia hemisphaerica)
TTACTTACTagatttagatttagattttgtgCTCTTTTTTGCATTCAGCT
GCTTTCTATGAGAATGTTCCCCTTTCTCTGAAACCTTATCTTTATACTGA
CTTCTAAGACCATCAACCCAAGCTCTGACAAATGCCTTTCCACGAATGTC
AATCCATCGAGCTATCACCAATTTGAAAAGGTTTTCCTTCTCAAAGGATT
CCAAGTTATCACCTTTCATTAATTCATCCCATCTATATATGAGATACTTT
CGcttgtaaattttttcttggataacctttttcaaattttcacctgCATA
GTTATTCAGTGTGACAGGATTAAAGACATCTCTCACTGAATATTCCACGG
TACGAAAAAACAAAAAGCAATTGTCATTGACATCCACCAGTCCACCTCTA
TTCTGTAAGTCAACCCACTTGTCTTTAAACTCAAAGCACTTGGCTTCACG
TGTTTTGATGCTCCACGTTTTGATGGCATCAACAAATTTTTCCCCCTCTt
ccctttttttataatattttgttgCAGAATGTGCAATAAAGCCTGCAACA
TACTTAACAATGTTCTGTTCTCTATCATCCATCTTTTCTCCCATTGGTAT
TGATGTTGTTGACTCTTCATGCAGTGATAGATACGATTCTATGTTTTCAG
TGATCAATAATTCTAACAATTTAGAAGACAACTTATACACAATTAAGTCA
AAGTTTGCTACTGTTGAGATTTGGCGTAACGGTATCCAGTCAATTGTACA
TTGTTCAGAGGAAATATACGTATAAAACTTTTGCCACATCAATCTTCTTC
CTTCTGAAATCAAAGGTGTAGTTGGTAAGCATAGTTCTACCATCTCGTAA
ATTTTTAGTAGGATTGTTTTGAATTGTtcttgaaaaactgataaattgGC
AATCAAGTTATTCAGAGTACATTTTCGTTTTTGAATAGTACATTGATCAC
CAATAAAAAATGATCTGTCGTCTTGTAAACAGCTGAGAGCACTCTTCCAC
AATTTTTCAGACTTTTCTTGTACATCATCAGCAGACAGTTTTAGAACTAT
GTTTGGAATTTTCTTGGTTGCATCATTGATTTTATCACAAATTCCAGTAT
GGACCAGGTTGAGATTTTGATCAGTGCCATTCTTTATTGACTTGACTAGT
TCATCAGGAATGAAACTTATCAGTACTTCATCAAGGTCATCATTAAAATA
CCCAGGTTCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042270-exon-sc0003323-1491911889:160..1786 | TCONS_00042270-exon-sc0003323-1491911889:160..1786 | Clytia hemisphaerica | exon |
| TCONS_00042270-exon-sc0003323-1510915933:160..1786 | TCONS_00042270-exon-sc0003323-1510915933:160..1786 | Clytia hemisphaerica | exon |
| TCONS_00042270-exon-sc0003323-1575043694:160..1786 | TCONS_00042270-exon-sc0003323-1575043694:160..1786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003323 | supercontig | sc0003323:160..1786 . |
Blast
The following BLAST results are available for this feature:
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