TCONS_00042269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042269
Unique NameTCONS_00042269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042269 ID=TCONS_00042269|Name=TCONS_00042269|organism=Clytia hemisphaerica|type=transcript|length=247bp
ATCGCAAAAAACCAACATAAATCGAAATGTTGAAGTTAGCTTTTGGATTA
ATGCTGATTGCAGTATGTAGTGCAAGCACCATCCAACTGTTGAGAGTGCG
CACAACGAAGACTGTTTACACTTCACAATACACCATCCATCGTAAAGCAT
ACAACTGGCTTCAAGCACGTGCTGAATGCAGACGATGTGGTGGTCATTTG
GTTACCATCAATGATGCAGCTGAGCATTTCTTCCTGACTAGAGCATT
Run BLAST on NCBI

transcript from alignment at sc0003323:4988..5486+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042269 ID=TCONS_00042269|Name=TCONS_00042269|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0003323:4988..5486+ (Clytia hemisphaerica)
ATCGCAAAAAACCAACATAAATCGAAATGTTGAAGTTAGCTTTTGGATTA
ATGCTGATTGCAGTATGTAGTGCAAGCACCATCCGTAagtcaatttttaa
ttttttttcgatttgtcAGTTAGTATCTTAAACCTTGCAAACATTTATTT
GTTTGTTGTCCAAGATTTTCTATATTAAGATTAAACACCTTGAATGACAT
GTGGCTTATACGACCAATTTACTAACTATTCAAAACGCAGGGAAGTCCAA
AGAACTTTCGAAATATTCGACCAGCTTAGAAGGGATCTTCCGGAGTACAA
TATCCTTGTGGTATAACACTTTTTTCTCATTTGCAGAACTGTTGAGAGTG
CGCACAACGAAGACTGTTTACACTTCACAATACACCATCCATCGTAAAGC
ATACAACTGGCTTCAAGCACGTGCTGAATGCAGACGATGTGGTGGTCATT
TGGTTACCATCAATGATGCAGCTGAGCATTTCTTCCTGACTAGAGCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026129XLOC_026129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042269-exon-sc0003323-1491911889:4988..5071TCONS_00042269-exon-sc0003323-1491911889:4988..5071Clytia hemisphaericaexon
TCONS_00042269-exon-sc0003323-1510915933:4988..5071TCONS_00042269-exon-sc0003323-1510915933:4988..5071Clytia hemisphaericaexon
TCONS_00042269-exon-sc0003323-1575043694:4988..5071TCONS_00042269-exon-sc0003323-1575043694:4988..5071Clytia hemisphaericaexon
TCONS_00042269-exon-sc0003323-1491911889:5324..5486TCONS_00042269-exon-sc0003323-1491911889:5324..5486Clytia hemisphaericaexon
TCONS_00042269-exon-sc0003323-1510915933:5324..5486TCONS_00042269-exon-sc0003323-1510915933:5324..5486Clytia hemisphaericaexon
TCONS_00042269-exon-sc0003323-1575043694:5324..5486TCONS_00042269-exon-sc0003323-1575043694:5324..5486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003323supercontigsc0003323:4988..5486 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.557867	2.52871	3.65168	1.93434	18.8365	18.3839	2.38047	0	3.33547	0	11.7388	9.0109	10.7785	39.6339	4.17513	3.58792	0	0	0.401131	0	0.921851	0.432476	0	0	0	0	0.633243	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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