TCONS_00042265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042265
Unique NameTCONS_00042265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042265 ID=TCONS_00042265|Name=TCONS_00042265|organism=Clytia hemisphaerica|type=transcript|length=432bp
CCTGAATTTCCTGACTTCTCGGTGTCTGGTCTACCTGGTCACCTCTCAGT
GGACTGGAATGGTGCTAAACAATATTTGGTAAATTTTCTTGATACTGTGC
AAAAGTCAAGCCTTGCTCAAAATATGTACTTCATCAAGTCCAGAAGTCAA
ATCGATTCAATTCATACAGTAAGAGTTCGAGATCAAGCTGTTAAATGTGA
TTGTCCAAGAAACAATGCCACACAAGGCATATGTGCTCATTCAATCACTC
TTGCATACCATTTGGACTTGCTTGAACAGCATCTTGTGAAGTGGGCTCCT
GCTCCTGATAATACAATGTTAGAGATCCAACCTCAGAATGCCGGCAAGAA
AAAGAGTGAACGAACGAGAAAACGAAAGAGCAATCAAGAGAGGAATACAG
AAGGCTATCAAGATAAACGACCCCCAAAACCT
Run BLAST on NCBI

protein sequence of TCONS_00042265-protein

>TCONS_00042265-protein ID=TCONS_00042265-protein|Name=TCONS_00042265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
PEFPDFSVSGLPGHLSVDWNGAKQYLVNFLDTVQKSSLAQNMYFIKSRSQ
IDSIHTVRVRDQAVKCDCPRNNATQGICAHSITLAYHLDLLEQHLVKWAP
APDNTMLEIQPQNAGKKKSERTRKRKSNQERNTEGYQDKRPPKP
Run BLAST on NCBI

transcript from alignment at sc0003320:102..857+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042265 ID=TCONS_00042265|Name=TCONS_00042265|organism=Clytia hemisphaerica|type=transcript|length=756bp|location=Sequence derived from alignment at sc0003320:102..857+ (Clytia hemisphaerica)
CCTGAATTTCCTGACTTCTCGGTGTCTGGTCTACCTGGTCACCTCTCAGT
GGACTGGAATGGTGCTAAACAATATTTGGTAAATTTTCTTGATACTGTGC
AAAAGTCAAGCCTTGCTCAAAATATGTACTTCATCAAGTCCAGAAGTCAA
ATCGATTCAATTCATACAGTAAGAGTTCGAGATCAAGCTGTTAAATGTGA
TTGTCCAAGAAACAATGCCACACAAGGTATGATTTCGACATTAATTTTTT
CCTGGTGATATTCTGACCACTTTACGTGTCAAGTATAAGCATTGTATACT
CCAGGGGAAAACTAAAATGGGAAGCTTAAATGCTTTAAATTAAAGGTGGA
TTCTCTCAAAAATTCCCAGAAAATCTATATACACTTTTTACCGTGGCATT
AGATTACTGATTCCTCATGCTGAATAATTTGGATTTGATACTGTGATAAT
GCAACTCCTTTTGAACTTTTATCATATGTCACAAAAGCAAACAAATCTTT
TTTACATGTCTGCCTTTACGAAATAGAACTGAATGCTCTTTCTTTTTAAG
GCATATGTGCTCATTCAATCACTCTTGCATACCATTTGGACTTGCTTGAA
CAGCATCTTGTGAAGTGGGCTCCTGCTCCTGATAATACAATGTTAGAGAT
CCAACCTCAGAATGCCGGCAAGAAAAAGAGTGAACGAACGAGAAAACGAA
AGAGCAATCAAGAGAGGAATACAGAAGGCTATCAAGATAAACGACCCCCA
AAACCT

Coding sequence (CDS) from alignment at sc0003320:102..857+

>TCONS_00042265 ID=TCONS_00042265|Name=TCONS_00042265|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0003320:102..857+ (Clytia hemisphaerica)
CCTGAATTTCCTGACTTCTCGGTGTCTGGTCTACCTGGTCACCTCTCAGT
GGACTGGAATGGTGCTAAACAATATTTGGTAAATTTTCTTGATACTGTGC
AAAAGTCAAGCCTTGCTCAAAATATGTACTTCATCAAGTCCAGAAGTCAA
ATCGATTCAATTCATACAGTAAGAGTTCGAGATCAAGCTGTTAAATGTGA
TTGTCCAAGAAACAATGCCACACAAGGCATATGTGCTCATTCAATCACTC
TTGCATACCATTTGGACTTGCTTGAACAGCATCTTGTGAAGTGGGCTCCT
GCTCCTGATAATACAATGTTAGAGATCCAACCTCAGAATGCCGGCAAGAA
AAAGAGTGAACGAACGAGAAAACGAAAGAGCAATCAAGAGAGGAATACAG
AAGGCTATCAAGATAAACGACCCCCAAAACCTCCTGAATTTCCTGACTTC
TCGGTGTCTGGTCTACCTGGTCACCTCTCAGTGGACTGGAATGGTGCTAA
ACAATATTTGGTAAATTTTCTTGATACTGTGCAAAAGTCAAGCCTTGCTC
AAAATATGTACTTCATCAAGTCCAGAAGTCAAATCGATTCAATTCATACA
GTAAGAGTTCGAGATCAAGCTGTTAAATGTGATTGTCCAAGAAACAATGC
CACACAAGGCATATGTGCTCATTCAATCACTCTTGCATACCATTTGGACT
TGCTTGAACAGCATCTTGTGAAGTGGGCTCCTGCTCCTGATAATACAATG
TTAGAGATCCAACCTCAGAATGCCGGCAAGAAAAAGAGTGAACGAACGAG
AAAACGAAAGAGCAATCAAGAGAGGAATACAGAAGGCTATCAAGATAAAC
GACCCCCAAAACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026125XLOC_026125Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042265-proteinTCONS_00042265-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042265-exon-sc0003320-1491911889:102..327TCONS_00042265-exon-sc0003320-1491911889:102..327Clytia hemisphaericaexon
TCONS_00042265-exon-sc0003320-1510915933:102..327TCONS_00042265-exon-sc0003320-1510915933:102..327Clytia hemisphaericaexon
TCONS_00042265-exon-sc0003320-1575043694:102..327TCONS_00042265-exon-sc0003320-1575043694:102..327Clytia hemisphaericaexon
TCONS_00042265-exon-sc0003320-1491911889:652..857TCONS_00042265-exon-sc0003320-1491911889:652..857Clytia hemisphaericaexon
TCONS_00042265-exon-sc0003320-1510915933:652..857TCONS_00042265-exon-sc0003320-1510915933:652..857Clytia hemisphaericaexon
TCONS_00042265-exon-sc0003320-1575043694:652..857TCONS_00042265-exon-sc0003320-1575043694:652..857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003320supercontigsc0003320:102..857 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.191487	0	0	0.161183	0	0.211616	0	0	0	0	0	0	0	0.15382	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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