TCONS_00042263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042263
Unique NameTCONS_00042263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042263 ID=TCONS_00042263|Name=TCONS_00042263|organism=Clytia hemisphaerica|type=transcript|length=283bp
CCAAATTGGAAATGCAAACTAAAAGCCAAGGCTATCCAAAGAAAGATAAT
TATTGTTAGTAAAGTATTTGAGATCGAAATGCATGCTATTATCTCTCTTT
AGATAGGATAAACCAAGAACGAATTCGATACAGGGGCCCCCAGCGGTTCA
CATTTGattgcatgaatgcgtgaatttgggctTTCCCCTCTTTTCCTCTG
ATTGTGTGCAGTTCTCCCGATTTGCCAATGTTTCCCTGATCTTTCCAGAA
AAACTttccaattttctgaaaaatcaggTTANN
Run BLAST on NCBI

transcript from alignment at sc0003319:4451..4733

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042263 ID=TCONS_00042263|Name=TCONS_00042263|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at sc0003319:4451..4733 (Clytia hemisphaerica)
NNTAAcctgatttttcagaaaattggaaAGTTTTTCTGGAAAGATCAGGG
AAACATTGGCAAATCGGGAGAACTGCACACAATCAGAGGAAAAGAGGGGA
AagcccaaattcacgcattcatgcaatCAAATGTGAACCGCTGGGGGCCC
CTGTATCGAATTCGTTCTTGGTTTATCCTATCTAAAGAGAGATAATAGCA
TGCATTTCGATCTCAAATACTTTACTAACAATAATTATCTTTCTTTGGAT
AGCCTTGGCTTTTAGTTTGCATTTCCAATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026123XLOC_026123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042263-exon-sc0003319-1491911889:4451..4733TCONS_00042263-exon-sc0003319-1491911889:4451..4733Clytia hemisphaericaexon
TCONS_00042263-exon-sc0003319-1510915933:4451..4733TCONS_00042263-exon-sc0003319-1510915933:4451..4733Clytia hemisphaericaexon
TCONS_00042263-exon-sc0003319-1575043694:4451..4733TCONS_00042263-exon-sc0003319-1575043694:4451..4733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003319supercontigsc0003319:4451..4733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.637163	0.113795	0	0	0.649924	0	3.56358	0.69403	6.65586	3.24388	1.41667	1.41554	0.588977	0	0	1.2446	0	1.03224	2.16128	2.42415	1.84861	0.936884	1.92786	0	4.43789	5.22934	2.62721	4.26645
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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