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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042261 ID=TCONS_00042261|Name=TCONS_00042261|organism=Clytia hemisphaerica|type=transcript|length=1022bp
GGACACTAAAAAAGCCTCCATTAAAGGGTGTATTACAGTCTTGGAACATA
TGCAGGAAACGAGTCCTGTTTTAGCTTTTGGAGAGTTTACAAAAGTCTAT
CAGGATACTGTtggaaattgtttaaaaaaagaggtGAGCCAAACGAGAAT
GGCCCCAATCGAGCTCCAAGAACGTTTTAACGATGACCAAATCTGTTTGA
CATTGTTCTATATGTATGGAAAAGCTTTCGCAGTctttccaaaatcaaaa
tctgtCAGTGGTATTATCCAACAAGTCGAGCAAATGCTTCCTAGTGATGT
CTTGGTGAATCAAAGCTTGGAAGCTAAAATTGGTGATGTTTTCAATACAG
CTTTGGAGATGTTAACATCAAAAGTTGACCGTGATATTGTAAAATCCTTA
TTCGCAACCGCTACAAGTGCAAAATTTACTGCAAAGCTACAAGGAATAAA
GAATATCACTGCAATCAGTAGGCTGAAAGACGAATTTAGTTATCGAGTCA
AGCAGTACACCGAGTTGAAAAGAACCTCGTTGACAGTCAGGAATGATATG
ACATGTTTGGGACAGCAACTCTTGTCAAACCGAATTCTAACTGCTCGCAA
GAAGAAAATGTATCTGTTAGATAATGAAAATCGTGGACGCGAACTAAAAG
TCGACCAATTTCCTGAATTGACATCGATTCTCGAGACTTTCNATAATGAA
AATCGTGGACGCGAACTAAAAGTCGACCAATTTCCTGAATTGACATCGAT
TCTCGAGACTTTCTTCGAGGAAGGAGGAATGGAAGCACACCCACGGCTTA
CAACGACTACACTGTTCCGGCATGAACAAAACAATATGTTTATGCGGCAG
GCAAGAGAACGTATCATGATGCATGCCCCTGACCAGTTCAAAATAAGCCT
TTCTTCTTGTTTTAATTATACAATGAATTATCGTGAAAACAGCCGCGCCG
CAATCCAACATCATCACGGTAGAGGGATAAATGCTGATATATCATTAAAG
AGAGCCCCGCGTGCTACTTCAA Run BLAST on NCBI protein sequence of TCONS_00042261-protein >TCONS_00042261-protein ID=TCONS_00042261-protein|Name=TCONS_00042261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
DTKKASIKGCITVLEHMQETSPVLAFGEFTKVYQDTVGNCLKKEVSQTRM
APIELQERFNDDQICLTLFYMYGKAFAVFPKSKSVSGIIQQVEQMLPSDV
LVNQSLEAKIGDVFNTALEMLTSKVDRDIVKSLFATATSAKFTAKLQGIK
NITAISRLKDEFSYRVKQYTELKRTSLTVRNDMTCLGQQLLSNRILTARK
KKMYLLDNENRGRELKVDQFPELTSILETFXNENRGRELKVDQFPELTSI
LETFFEEGGMEAHPRLTTTTLFRHEQNNMFMRQARERIMMHAPDQFKISL
SSCFNYTMNYRENSRAAIQHHHGRGINADISLKRAPRATS Run BLAST on NCBI transcript from alignment at sc0003319:10180..12665+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042261 ID=TCONS_00042261|Name=TCONS_00042261|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at sc0003319:10180..12665+ (Clytia hemisphaerica)
GGACACTAAAAAAGCCTCCATTAAAGGGTGTATTACAGTCTTGGAACATA
TGCAGGAAACGAGTCCTGTTTTAGCTTTTGGAGAGTTTACAAAAGTCTAT
CAGGATACTGTtggaaattgtttaaaaaaagaggtGAGCCAAACGAGAAT
GGCCCCAATCGAGCTCCAAGAACGTTTTAACGATGACCAAATCTGTTTGA
CATTGTTCTATATGTATGGAAAAGCTTTCGCAGTctttccaaaatcaaaa
tctgtCAGTGGTATTATCCAACAAGTCGAGCAAATGCTTCCTAGTGATGT
CTTGGTGAATCAAAGCTTGGAAGCTAAAATTGGTGATGTTTTCAATACAG
CTTTGGAGATGTTAACATCAAAAGTTGACCGTGATATTGTAAAATCCTTA
TTCGCAACCGCTACAAGTGCAAAATTTACTGCAAAGCTACAAGGTATTTA
TAAATTAAACTGAAGTTTAGTGTATTAAAGTCGTTTAACGTTTATATGTA
CTGGGAAGTTTTTTTCCACAGACCCGATATTATCATCATAGTCCGCGTAA
AAGAGGTTTTCACAAAGGATATCTGTCAGTTCTATCCGTGAGCCAGCATT
ATGACGTCATTCGATGTCCTTATTCCAAGAAATTATTATTTCtttactct
caggtgcctaataaacgggggTATGAAAAGAGTTTCAAATTTATTAAACA
GGgagacctaattgccgggggttggaaattgtacgtCTGAAAACCCTCAA
ATATagatataggctaaaatcaggctatttagagcaaaataaaagACTCT
CACTTtgtcagctgaaaatatttttaaaaattgatgaaCGGAAGAGGCTT
AATCAGGTCCGGGGGttagaaaaagccaaaaaattaacaaacggGGATCA
TATGCGAGGGTATTCTAGTTGTTAACAGGTCAGTGCTTTTATACGGCTcg
gttttggcaaaaaattgagaacaatctgagcctcagatttctgAAATGTA
TAAGAATGTGTTGATTTTAAGGCCCTTCTTAAGACCTTTACTGGAGAAAG
TATAAGTCTATTTTGACAGTCAGGAATGATATGACATGTTTGGGACAGCA
ACTCTTGTCAAACCGAATTCTAACTGCTCGCAAGAAGAAAATGTATCTGT
TAGANGTATGTACTGGGAAGTTTTTTTCCACAGACCCGATATTATCATCA
TAGTCCGCGTAAAAGAGGTTTGCACAAAGGATATCTGTCAGTTCTATCCG
TGAGCCAGCATTATGACGTCATTCGATGTCCTAATTCCAAGAAATTATTA
TTTCtttactctcaggtgcctaataaacgggggTATGAAAAGAGTTTCAA
ATTTATTAAACAGGGAGACCTAATTGCCggtggttggaaattgtacGTCT
GAAAACCCTCAAATATAGATATAGCAAAATAAAAGACTCTCACTTtgtca
gctgaaaatatttttaaaaattgatgaaCGGAAGAGGCTTAATCAGGTCC
GGGGGTtagaaaaaaccaaaaaattaacaaacggGGATCATATGCGAGGA
TATTCTAGTTGTTAACAGGTCAGTGCTTTTATACGGCTcggttttggcaa
aaaattgaGAACAATCTTAGCCTCAGATTTCTGAAATGTATAAGAATGTG
TTGATTTTAAAGCCCTTCTTAAGACCTTTACTGGAgaaagtataagtcta
ttaAAAACATGGTAAGAGCATTCAAGTCTGAAAATtacgaaaaaataaga
acaaccgaGGCTGAGCTAacatttactggttcttataaaaaaaagaaaaa
cctgtatttcccaaggaaaatcaaattttgatacTGCTGTATTTACTAAG
GAAAATGTTATTTCAACCTCAAATTAGAAGTACAAAAACCTATTGTTGTC
TTTTTAGGAATAAAGAATATCACTGCAATCAGTAGGCTGAAAGACGAATT
TAGTTATCGAGTCAAGCAGTACACCGAGTTGAAAAGAACCTCGTTGACAG
TCAGGAATGATATGACATGTTTGGGACAGCAACTCTTGTCAAACCGAATT
CTAACTGCTCGCAAGAAGAAAATGTATCTGTTAGATAATGAAAATCGTGG
ACGCGAACTAAAAGTCGACCAATTTCCTGAATTGACATCGATTCTCGAGA
CTTTCNATAATGAAAATCGTGGACGCGAACTAAAAGTCGACCAATTTCCT
GAATTGACATCGATTCTCGAGACTTTCTTCGAGGAAGGAGGAATGGAAGC
ACACCCACGGCTTACAACGACTACACTGTTCCGGCATGAACAAAACAATA
TGTTTATGCGGCAGGCAAGAGAACGTATCATGATGCATGCCCCTGACCAG
TTCAAAATAAGCCTTTCTTCTTGTTTTAATTATACAATGAATTATCGTGA
AAACAGCCGCGCCGCAATCCAACATCATCACGGTAGAGGGATAAATGCTG
ATATATCATTAAAGAGAGCCCCGCGTGCTACTTCAA Coding sequence (CDS) from alignment at sc0003319:10180..12665+ >TCONS_00042261 ID=TCONS_00042261|Name=TCONS_00042261|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0003319:10180..12665+ (Clytia hemisphaerica)
GACACTAAAAAAGCCTCCATTAAAGGGTGTATTACAGTCTTGGAACATAT
GCAGGAAACGAGTCCTGTTTTAGCTTTTGGAGAGTTTACAAAAGTCTATC
AGGATACTGTtggaaattgtttaaaaaaagaggtGAGCCAAACGAGAATG
GCCCCAATCGAGCTCCAAGAACGTTTTAACGATGACCAAATCTGTTTGAC
ATTGTTCTATATGTATGGAAAAGCTTTCGCAGTctttccaaaatcaaaat
ctgtCAGTGGTATTATCCAACAAGTCGAGCAAATGCTTCCTAGTGATGTC
TTGGTGAATCAAAGCTTGGAAGCTAAAATTGGTGATGTTTTCAATACAGC
TTTGGAGATGTTAACATCAAAAGTTGACCGTGATATTGTAAAATCCTTAT
TCGCAACCGCTACAAGTGCAAAATTTACTGCAAAGCTACAAGGAATAAAG
AATATCACTGCAATCAGTAGGCTGAAAGACGAATTTAGTTATCGAGTCAA
GCAGTACACCGAGTTGAAAAGAACCTCGTTGACAGTCAGGAATGATATGA
CATGTTTGGGACAGCAACTCTTGTCAAACCGAATTCTAACTGCTCGCAAG
AAGAAAATGTATCTGTTAGATAATGAAAATCGTGGACGCGAACTAAAAGT
CGACCAATTTCCTGAATTGACATCGATTCTCGAGACTTTCNATAATGAAA
ATCGTGGACGCGAACTAAAAGTCGACCAATTTCCTGAATTGACATCGATT
CTCGAGACTTTCTTCGAGGAAGGAGGAATGGAAGCACACCCACGGCTTAC
AACGACTACACTGTTCCGGCATGAACAAAACAATATGTTTATGCGGCAGG
CAAGAGAACGTATCATGATGCATGCCCCTGACCAGTTCAAAATAAGCCTT
TCTTCTTGTTTTAATTATACAATGAATTATCGTGAAAACAGCCGCGCCGC
AATCCAACATCATCACGGTAGAGGGATAAATGCTGATATATCATTAAAGA
GAGCCCCGCGTGCTACTTCAGACACTAAAAAAGCCTCCATTAAAGGGTGT
ATTACAGTCTTGGAACATATGCAGGAAACGAGTCCTGTTTTAGCTTTTGG
AGAGTTTACAAAAGTCTATCAGGATACTGTtggaaattgtttaaaaaaag
aggtGAGCCAAACGAGAATGGCCCCAATCGAGCTCCAAGAACGTTTTAAC
GATGACCAAATCTGTTTGACATTGTTCTATATGTATGGAAAAGCTTTCGC
AGTctttccaaaatcaaaatctgtCAGTGGTATTATCCAACAAGTCGAGC
AAATGCTTCCTAGTGATGTCTTGGTGAATCAAAGCTTGGAAGCTAAAATT
GGTGATGTTTTCAATACAGCTTTGGAGATGTTAACATCAAAAGTTGACCG
TGATATTGTAAAATCCTTATTCGCAACCGCTACAAGTGCAAAATTTACTG
CAAAGCTACAAGGAATAAAGAATATCACTGCAATCAGTAGGCTGAAAGAC
GAATTTAGTTATCGAGTCAAGCAGTACACCGAGTTGAAAAGAACCTCGTT
GACAGTCAGGAATGATATGACATGTTTGGGACAGCAACTCTTGTCAAACC
GAATTCTAACTGCTCGCAAGAAGAAAATGTATCTGTTAGATAATGAAAAT
CGTGGACGCGAACTAAAAGTCGACCAATTTCCTGAATTGACATCGATTCT
CGAGACTTTCNATAATGAAAATCGTGGACGCGAACTAAAAGTCGACCAAT
TTCCTGAATTGACATCGATTCTCGAGACTTTCTTCGAGGAAGGAGGAATG
GAAGCACACCCACGGCTTACAACGACTACACTGTTCCGGCATGAACAAAA
CAATATGTTTATGCGGCAGGCAAGAGAACGTATCATGATGCATGCCCCTG
ACCAGTTCAAAATAAGCCTTTCTTCTTGTTTTAATTATACAATGAATTAT
CGTGAAAACAGCCGCGCCGCAATCCAACATCATCACGGTAGAGGGATAAA
TGCTGATATATCATTAAAGAGAGCCCCGCGTGCTACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042261-exon-sc0003319-1491911889:10180..10622 | TCONS_00042261-exon-sc0003319-1491911889:10180..10622 | Clytia hemisphaerica | exon |
| TCONS_00042261-exon-sc0003319-1510915933:10180..10622 | TCONS_00042261-exon-sc0003319-1510915933:10180..10622 | Clytia hemisphaerica | exon |
| TCONS_00042261-exon-sc0003319-1575043694:10180..10622 | TCONS_00042261-exon-sc0003319-1575043694:10180..10622 | Clytia hemisphaerica | exon |
| TCONS_00042261-exon-sc0003319-1491911889:12087..12665 | TCONS_00042261-exon-sc0003319-1491911889:12087..12665 | Clytia hemisphaerica | exon |
| TCONS_00042261-exon-sc0003319-1510915933:12087..12665 | TCONS_00042261-exon-sc0003319-1510915933:12087..12665 | Clytia hemisphaerica | exon |
| TCONS_00042261-exon-sc0003319-1575043694:12087..12665 | TCONS_00042261-exon-sc0003319-1575043694:12087..12665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003319 | supercontig | sc0003319:10180..12665 + |
Blast
The following BLAST results are available for this feature:
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