TCONS_00042257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042257
Unique NameTCONS_00042257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042257 ID=TCONS_00042257|Name=TCONS_00042257|organism=Clytia hemisphaerica|type=transcript|length=403bp
ACTTGTTCGTGTGCCTCCACCACCTGTTGCAGACCCAACTCCGGTTGTAC
CAGTGGTTGAAGAAGAAACTGATGTTGAGGTTGTTGTATTTGAAACTTAT
GAGCCTTATGAGGATTTCAAGAGTCAATGTTCGAAGTGGAAACTTTCTAA
TTGGAAGGTTGTTTTCACTGGTGAGCAATGCTTTCTAACTTATGAGCTTG
AGGATTCCAAGTTTTCCATACCAAAACTTGAAATCATTATAAACTCATCT
CTTGATTTCAAAGTGAGGGTATATGGTTGGTATTTGCCTGATGACCACAA
TGTTTACAAACAGCATAACCGGTCCATCAGAAAGATCTTATTAACTGACT
TCTGCtcagatattttgaaattagaaCTTTGTAAAGGTGTTTCTTCTGCC
ACT
Run BLAST on NCBI

protein sequence of TCONS_00042257-protein

>TCONS_00042257-protein ID=TCONS_00042257-protein|Name=TCONS_00042257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
LVRVPPPPVADPTPVVPVVEEETDVEVVVFETYEPYEDFKSQCSKWKLSN
WKVVFTGEQCFLTYELEDSKFSIPKLEIIINSSLDFKVRVYGWYLPDDHN
VYKQHNRSIRKILLTDFCSDILKLELCKGVSSAT
Run BLAST on NCBI

transcript from alignment at sc0003312:11778..12180

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042257 ID=TCONS_00042257|Name=TCONS_00042257|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at sc0003312:11778..12180 (Clytia hemisphaerica)
AGTGGCAGAAGAAACACCTTTACAAAGttctaatttcaaaatatctgaGC
AGAAGTCAGTTAATAAGATCTTTCTGATGGACCGGTTATGCTGTTTGTAA
ACATTGTGGTCATCAGGCAAATACCAACCATATACCCTCACTTTGAAATC
AAGAGATGAGTTTATAATGATTTCAAGTTTTGGTATGGAAAACTTGGAAT
CCTCAAGCTCATAAGTTAGAAAGCATTGCTCACCAGTGAAAACAACCTTC
CAATTAGAAAGTTTCCACTTCGAACATTGACTCTTGAAATCCTCATAAGG
CTCATAAGTTTCAAATACAACAACCTCAACATCAGTTTCTTCTTCAACCA
CTGGTACAACCGGAGTTGGGTCTGCAACAGGTGGTGGAGGCACACGAACA
AGT

Coding sequence (CDS) from alignment at sc0003312:11778..12180

>TCONS_00042257 ID=TCONS_00042257|Name=TCONS_00042257|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0003312:11778..12180 (Clytia hemisphaerica)
AGTGGCAGAAGAAACACCTTTACAAAGttctaatttcaaaatatctgaGC
AGAAGTCAGTTAATAAGATCTTTCTGATGGACCGGTTATGCTGTTTGTAA
ACATTGTGGTCATCAGGCAAATACCAACCATATACCCTCACTTTGAAATC
AAGAGATGAGTTTATAATGATTTCAAGTTTTGGTATGGAAAACTTGGAAT
CCTCAAGCTCATAAGTTAGAAAGCATTGCTCACCAGTGAAAACAACCTTC
CAATTAGAAAGTTTCCACTTCGAACATTGACTCTTGAAATCCTCATAAGG
CTCATAAGTTTCAAATACAACAACCTCAACATCAGTTTCTTCTTCAACCA
CTGGTACAACCGGAGTTGGGTCTGCAACAGGTGGTGGAGGCACACGAACA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026117XLOC_026117Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042257-exon-sc0003312-1491911889:11778..12180TCONS_00042257-exon-sc0003312-1491911889:11778..12180Clytia hemisphaericaexon
TCONS_00042257-exon-sc0003312-1510915933:11778..12180TCONS_00042257-exon-sc0003312-1510915933:11778..12180Clytia hemisphaericaexon
TCONS_00042257-exon-sc0003312-1575043694:11778..12180TCONS_00042257-exon-sc0003312-1575043694:11778..12180Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042257-proteinTCONS_00042257-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003312supercontigsc0003312:11778..12180 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317063	1.50148	0.885032	0.49874	2.28607	1.47636	1.69727	1.48552	0	0.750791	0.689185	1.83583	1.41902	0.828532	1.36337	1.37881	0.694802	1.10508	0.826904	1.58756	2.28788	1.10054	0	1.30866	1.24446	1.22663	1.35347	0.796805	2.03378	2.4255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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