TCONS_00042253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042253
Unique NameTCONS_00042253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042253 ID=TCONS_00042253|Name=TCONS_00042253|organism=Clytia hemisphaerica|type=transcript|length=766bp
TATTGAAACAATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATTCA
GTCAACGTTTTAGCAAAGCTGGCAGAGCACCTACCGAAAGACGTGGATGT
TCTGAATAAATTGGGAACCTCGTATTTGATTATGGGCTCCAATCGCAAAG
CGTTTGATATTCACAAAAAGGTAATATCAGTGGACCCAGGAAATGGTATT
GCAAACGCGAATATCGGTTACATCCTGAAAGCGCTACAGAAGTATCAAGA
AGCTATTCCTTATCTGGAGGCTGGAATCGAAAGCGAAGATCCGGAGACAA
ACCAAGCCAAATTTTATGTTTTCCTTGGTGAGGCATATACCAAGTCTGGT
CGAACAGATGACGCATGGAAACTATACCATCAAGGTGCTGAACGCGGCTT
CTTCATGTCGGCAGCTCAACGATCTACAGAAAATGCAGAATCTAAACTTC
GAGCACAACCTTGGTGGACCGTCGAACAATCTGGTTACGAAAAAGAGATT
AGGAAGTTGGAATATTACTGGAAAACGATGCGTGATGAAGCAAATAAAAT
TctgaaacaaaacaaagacCGTTTCCCACTAGAAGACGAAGGGCTCTTAG
ATACAGGGGACTGGAGACAATTGACATTATATCAACGTggtcaacaaaac
aaaaagaattgcCAACTTGTACCAAAGACGTGTGAGATCATCAGTCAATT
CAAGCAAGCTACTGGAAACATAAGAGGACAGatTAAATTTTCGATCATGA
CACCTGGCACACACGT
Run BLAST on NCBI

protein sequence of TCONS_00042253-protein

>TCONS_00042253-protein ID=TCONS_00042253-protein|Name=TCONS_00042253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
LKQSERLIFFGKGRDSVNVLAKLAEHLPKDVDVLNKLGTSYLIMGSNRKA
FDIHKKVISVDPGNGIANANIGYILKALQKYQEAIPYLEAGIESEDPETN
QAKFYVFLGEAYTKSGRTDDAWKLYHQGAERGFFMSAAQRSTENAESKLR
AQPWWTVEQSGYEKEIRKLEYYWKTMRDEANKILKQNKDRFPLEDEGLLD
TGDWRQLTLYQRGQQNKKNCQLVPKTCEIISQFKQATGNIRGQIKFSIMT
PGTH
Run BLAST on NCBI

transcript from alignment at sc0003311:7340..12802-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042253 ID=TCONS_00042253|Name=TCONS_00042253|organism=Clytia hemisphaerica|type=transcript|length=5463bp|location=Sequence derived from alignment at sc0003311:7340..12802- (Clytia hemisphaerica)
TATTGAAACAATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATTCA
GTCAACGTTTTAGCAAAGCTGGCAGAGCACCTACCGAAAGACGTGGATGT
TCTGAATAAATTGGGAACCTCGTATTTGATTATGGGCTCCAATCGCAAAG
CGTTTGATATTCACAAAAAGGTGAAACTCATTAATTATTGTTTTGAAATA
ACAATTTGAAGCCGTTTATAGAGCGTAAACGAAATTTTCCAAGGCCCAAT
CCATTTTTTGTTTTTATTTTTGCCTAAAATTTTCTATTAGATGGTGAAGA
CAGACTTCAAAAAACGTCACATTTTGCCAACTGTATTAAGCATATTATTC
CACCCTTATCTCGCTGACCCGTTGATACTTTTTTCGTAAGTGGGCTTAGA
ATAAAGGATCTAAACAGCAGTGATGATGGAAAATATTATCCTCTTTCTTT
GGAAGAATTCTAATATTTAAATGTTACTTCTCGTACCAGATGTCTCCAAA
AATGGAGAGAAGCAGAATGGGCGATCAAGTTCTTGGTTTTTTTTCCTAAA
AGGGCAGTGAGATTTTCATCCAATTTTACTATCGAGGGGAAGTAATTTTC
AGCCTATATATAGACGTTAGATGGGTCTGTTTTGACTTTGTATATCAATT
TTGTAAACAAACCCTCTTTTTATTAACAGGTAATATCAGTGGACCCAGGA
AATGGTATTGCAAACGCGAATATCGGTTACATCCTGAAAGCGCTACAGAA
GTATCAAGAAGCTATTCCTTATCTGGAGGCTGGAATCGAAAGCGAAGATC
CGGAGACAAACCAAGCCAAATTTTATGTTTTCCTTGGTGAGGCATATACC
AAGTCTGGTCGAACAGATGACGTAAGTATTTCAAGTGTATTTCTTTTCTT
TGAACTTCGTTCTTTATACTTCATTTGAGGATAGAGTGGGTGAAAAAGCG
ACTCAAAAACCCAATGTACACAGAAACAAGAAAAAAAGACTTTTTGACGA
ATATTAGTACTGAGGAGGGATGGATACACATCTTTATTTAACTACTAAGA
AAACACCTTCGCTAGTGACATAGTCTTTTTTAAACTTGAGTGTCCATTTT
ATCGAAATTGCGTTTGATTACATATTCAAAAGGTCTATGCATGTTGAAAA
TTGAAGCTAAAACCCTCCCCCTACAACAGACTATAGAGTTGAGTTATTTA
AAAAAGAAGATACAGACCCCCTTCTCACAGACCCGGTAGAAAACTCGATG
GGATTTGATATTCCCATATTTTTTATAGCTAGGGNNNNNNNNNNNNNNNN
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NGTTCTTTCCAGGCATGGAAACTATACCATCAAGGTGCTGAACGCGGCTT
CTTCATGTCGGCAGCTCAACGATCTACAGAAAATGCAGAATCTAAACTTC
GAGCACAACCTTGGTGGACCGTCGAACAATCTGGTTACGAAAAAGAGATT
AGGTAATACCTTCATCGGCCTCATCTTCAACCTCCTGTGTATTATCAGCT
TTTAGGTGCTTGCTGATGATAGCGCCTAATAATACTCTGGTATTTTCTGG
CGTCCATCAGTAACGTAAATAAAGCTTGGAATACACGGGGGCGACCATCT
ACGAGATAAATTCCCGCCAAAAGTCCTTCCCTTAAGATATTGTCTCTTAA
AATAAATCTAAATGCTCTGTTCGAGAAGGATTTTCACTCAGAGTGTATTC
TGAGATATCAAAAAAATACTGACAACTAATTTTTCCGCAGGAAGTTGGAA
TATTACTGGAAAACGATGCGTGATGAAGCAAATAAAATTCTGAAACAAAA
CAAAGACCGTTTCCCACTAGAAGACGAAGGTATTTGTTGACTGCGCATTT
ATTTAGAAAATTATAACCACTCACGAATGCCGAAAATAAGAAAATTTAGA
CATTTAGAAAACTAAAAACACCCAAAGGTTTAAAAATCTCTTCATAAAGA
GAAACGTGCAAGAGAAATTAAAGGATAAAGAAACCTTTAAACAACCATAT
TGGGGGGGAGACACTTGGGCACAAAAGGGGTACGGGGGTGTGCCGCTGGT
CAAAGTACCTTTTTCACCTCCACGTAGGATCGCAAAAACACCAAAATAGA
AAAGACGGTCCCTCGTAGATAACCTTTTTTTGGAGATTTTGGGAAAAAAG
TAGAACATTTTGAGAAAGTTTGCGAGATTTAGTCCCATTCAGGGTCACTT
TTTTCGCAAATTTTTTCACGTAGGCCCCATTTTTCTGACCACAGGTGAAA
CACCCCCTCCCCCAGGGTCATATACTCGAAAATTTCGATTTGCCTCACTC
GGACCAGATTCTTGGCACTTTGCAACAAATTTCTAAAAAGTCCTCAAGAT
GTATTAAGATAAAGAATATCTATTCTTTCTATTTGCAGGGCTCTTAGATA
CAGGGGACTGGAGACAATTGACATTATATCAACGTGGTCAACAAAACAAA
AAGAATTGCCAACTTGTACCAAAGACGTGTGAGATCATCAGTCAATTCAA
GCAAGCTACTGGAAACATAAGAGGACAGGTTGGTTAACATCTAACTCTAA
CATCTACGCCGTCTACCGCCCCATCCCCCCGCCCCCGGCTCGAAGACTGA
GTGTGCGGACCCTGGGGGCCAACTACTAGTGGCATTGCAGTTGCCCAGGT
TTCGGAAAATTATCAAATTTCGAATTGTTTCAGGAATCTTTACGAGTTAA
TTGAAACGAAATTCTAAAGATATAACTTTAAGATAAAGTTTTCAAAATCA
ACTTTTCTTTGCAAAATGTTGATTTGTCTACTTCCATGGTTTAGCTTCTT
GGGGTAGAGGCCCGAGATCTGGTTTTTATTTTATACATAAATGGCGAAAT
TAATTGCAACCGTTTTCTTAGGCATCAAATTTTGTTTGGTTTAATTGATC
TTAATGTAACCTGTTAGAAGAACTCAAAATGTCCAAAGCTCTGTCTGGTA
TAGACTTTTTGCTAACGTCATCAATTTAATTTTGGGTTTTTTAATTATTC
AACATGACATCCTGATTTACAAAAGGTCATTTTGTATAAAACTGATTTTA
TTTTTTTATTTTTTCAAACAAAATTTAGATTAAATTTTCGATCATGACAC
CTGGCACACACGT

Coding sequence (CDS) from alignment at sc0003311:7340..12802-

>TCONS_00042253 ID=TCONS_00042253|Name=TCONS_00042253|organism=Clytia hemisphaerica|type=CDS|length=4572bp|location=Sequence derived from alignment at sc0003311:7340..12802- (Clytia hemisphaerica)
ATTAAATTTTCGATCATGACACCTGGCACACACGGCTCTTAGATACAGGG
GACTGGAGACAATTGACATTATATCAACGTGGTCAACAAAACAAAAAGAA
TTGCCAACTTGTACCAAAGACGTGTGAGATCATCAGTCAATTCAAGCAAG
CTACTGGAAACATAAGAGGACAGGAAGTTGGAATATTACTGGAAAACGAT
GCGTGATGAAGCAAATAAAATTCTGAAACAAAACAAAGACCGTTTCCCAC
TAGAAGACGAAGGCATGGAAACTATACCATCAAGGTGCTGAACGCGGCTT
CTTCATGTCGGCAGCTCAACGATCTACAGAAAATGCAGAATCTAAACTTC
GAGCACAACCTTGGTGGACCGTCGAACAATCTGGTTACGAAAAAGAGATT
AGGTAATATCAGTGGACCCAGGAAATGGTATTGCAAACGCGAATATCGGT
TACATCCTGAAAGCGCTACAGAAGTATCAAGAAGCTATTCCTTATCTGGA
GGCTGGAATCGAAAGCGAAGATCCGGAGACAAACCAAGCCAAATTTTATG
TTTTCCTTGGTGAGGCATATACCAAGTCTGGTCGAACAGATGACTTGAAA
CAATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATTCAGTCAACGT
TTTAGCAAAGCTGGCAGAGCACCTACCGAAAGACGTGGATGTTCTGAATA
AATTGGGAACCTCGTATTTGATTATGGGCTCCAATCGCAAAGCGTTTGAT
ATTCACAAAAAGATTAAATTTTCGATCATGACACCTGGCACACACGGCTC
TTAGATACAGGGGACTGGAGACAATTGACATTATATCAACGTGGTCAACA
AAACAAAAAGAATTGCCAACTTGTACCAAAGACGTGTGAGATCATCAGTC
AATTCAAGCAAGCTACTGGAAACATAAGAGGACAGGAAGTTGGAATATTA
CTGGAAAACGATGCGTGATGAAGCAAATAAAATTCTGAAACAAAACAAAG
ACCGTTTCCCACTAGAAGACGAAGGCATGGAAACTATACCATCAAGGTGC
TGAACGCGGCTTCTTCATGTCGGCAGCTCAACGATCTACAGAAAATGCAG
AATCTAAACTTCGAGCACAACCTTGGTGGACCGTCGAACAATCTGGTTAC
GAAAAAGAGATTAGGTAATATCAGTGGACCCAGGAAATGGTATTGCAAAC
GCGAATATCGGTTACATCCTGAAAGCGCTACAGAAGTATCAAGAAGCTAT
TCCTTATCTGGAGGCTGGAATCGAAAGCGAAGATCCGGAGACAAACCAAG
CCAAATTTTATGTTTTCCTTGGTGAGGCATATACCAAGTCTGGTCGAACA
GATGACTTGAAACAATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGA
TTCAGTCAACGTTTTAGCAAAGCTGGCAGAGCACCTACCGAAAGACGTGG
ATGTTCTGAATAAATTGGGAACCTCGTATTTGATTATGGGCTCCAATCGC
AAAGCGTTTGATATTCACAAAAAGATTAAATTTTCGATCATGACACCTGG
CACACACGGCTCTTAGATACAGGGGACTGGAGACAATTGACATTATATCA
ACGTGGTCAACAAAACAAAAAGAATTGCCAACTTGTACCAAAGACGTGTG
AGATCATCAGTCAATTCAAGCAAGCTACTGGAAACATAAGAGGACAGGAA
GTTGGAATATTACTGGAAAACGATGCGTGATGAAGCAAATAAAATTCTGA
AACAAAACAAAGACCGTTTCCCACTAGAAGACGAAGGCATGGAAACTATA
CCATCAAGGTGCTGAACGCGGCTTCTTCATGTCGGCAGCTCAACGATCTA
CAGAAAATGCAGAATCTAAACTTCGAGCACAACCTTGGTGGACCGTCGAA
CAATCTGGTTACGAAAAAGAGATTAGGTAATATCAGTGGACCCAGGAAAT
GGTATTGCAAACGCGAATATCGGTTACATCCTGAAAGCGCTACAGAAGTA
TCAAGAAGCTATTCCTTATCTGGAGGCTGGAATCGAAAGCGAAGATCCGG
AGACAAACCAAGCCAAATTTTATGTTTTCCTTGGTGAGGCATATACCAAG
TCTGGTCGAACAGATGACTTGAAACAATCTGAGCGGCTTATATTTTTTGG
TAAAGGACGAGATTCAGTCAACGTTTTAGCAAAGCTGGCAGAGCACCTAC
CGAAAGACGTGGATGTTCTGAATAAATTGGGAACCTCGTATTTGATTATG
GGCTCCAATCGCAAAGCGTTTGATATTCACAAAAAGATTAAATTTTCGAT
CATGACACCTGGCACACACGGCTCTTAGATACAGGGGACTGGAGACAATT
GACATTATATCAACGTGGTCAACAAAACAAAAAGAATTGCCAACTTGTAC
CAAAGACGTGTGAGATCATCAGTCAATTCAAGCAAGCTACTGGAAACATA
AGAGGACAGGAAGTTGGAATATTACTGGAAAACGATGCGTGATGAAGCAA
ATAAAATTCTGAAACAAAACAAAGACCGTTTCCCACTAGAAGACGAAGGC
ATGGAAACTATACCATCAAGGTGCTGAACGCGGCTTCTTCATGTCGGCAG
CTCAACGATCTACAGAAAATGCAGAATCTAAACTTCGAGCACAACCTTGG
TGGACCGTCGAACAATCTGGTTACGAAAAAGAGATTAGGTAATATCAGTG
GACCCAGGAAATGGTATTGCAAACGCGAATATCGGTTACATCCTGAAAGC
GCTACAGAAGTATCAAGAAGCTATTCCTTATCTGGAGGCTGGAATCGAAA
GCGAAGATCCGGAGACAAACCAAGCCAAATTTTATGTTTTCCTTGGTGAG
GCATATACCAAGTCTGGTCGAACAGATGACTTGAAACAATCTGAGCGGCT
TATATTTTTTGGTAAAGGACGAGATTCAGTCAACGTTTTAGCAAAGCTGG
CAGAGCACCTACCGAAAGACGTGGATGTTCTGAATAAATTGGGAACCTCG
TATTTGATTATGGGCTCCAATCGCAAAGCGTTTGATATTCACAAAAAGAT
TAAATTTTCGATCATGACACCTGGCACACACGGCTCTTAGATACAGGGGA
CTGGAGACAATTGACATTATATCAACGTGGTCAACAAAACAAAAAGAATT
GCCAACTTGTACCAAAGACGTGTGAGATCATCAGTCAATTCAAGCAAGCT
ACTGGAAACATAAGAGGACAGGAAGTTGGAATATTACTGGAAAACGATGC
GTGATGAAGCAAATAAAATTCTGAAACAAAACAAAGACCGTTTCCCACTA
GAAGACGAAGGCATGGAAACTATACCATCAAGGTGCTGAACGCGGCTTCT
TCATGTCGGCAGCTCAACGATCTACAGAAAATGCAGAATCTAAACTTCGA
GCACAACCTTGGTGGACCGTCGAACAATCTGGTTACGAAAAAGAGATTAG
GTAATATCAGTGGACCCAGGAAATGGTATTGCAAACGCGAATATCGGTTA
CATCCTGAAAGCGCTACAGAAGTATCAAGAAGCTATTCCTTATCTGGAGG
CTGGAATCGAAAGCGAAGATCCGGAGACAAACCAAGCCAAATTTTATGTT
TTCCTTGGTGAGGCATATACCAAGTCTGGTCGAACAGATGACTTGAAACA
ATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATTCAGTCAACGTTT
TAGCAAAGCTGGCAGAGCACCTACCGAAAGACGTGGATGTTCTGAATAAA
TTGGGAACCTCGTATTTGATTATGGGCTCCAATCGCAAAGCGTTTGATAT
TCACAAAAAGATTAAATTTTCGATCATGACACCTGGCACACACGGCTCTT
AGATACAGGGGACTGGAGACAATTGACATTATATCAACGTGGTCAACAAA
ACAAAAAGAATTGCCAACTTGTACCAAAGACGTGTGAGATCATCAGTCAA
TTCAAGCAAGCTACTGGAAACATAAGAGGACAGGAAGTTGGAATATTACT
GGAAAACGATGCGTGATGAAGCAAATAAAATTCTGAAACAAAACAAAGAC
CGTTTCCCACTAGAAGACGAAGGCATGGAAACTATACCATCAAGGTGCTG
AACGCGGCTTCTTCATGTCGGCAGCTCAACGATCTACAGAAAATGCAGAA
TCTAAACTTCGAGCACAACCTTGGTGGACCGTCGAACAATCTGGTTACGA
AAAAGAGATTAGGTAATATCAGTGGACCCAGGAAATGGTATTGCAAACGC
GAATATCGGTTACATCCTGAAAGCGCTACAGAAGTATCAAGAAGCTATTC
CTTATCTGGAGGCTGGAATCGAAAGCGAAGATCCGGAGACAAACCAAGCC
AAATTTTATGTTTTCCTTGGTGAGGCATATACCAAGTCTGGTCGAACAGA
TGACTTGAAACAATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATT
CAGTCAACGTTTTAGCAAAGCTGGCAGAGCACCTACCGAAAGACGTGGAT
GTTCTGAATAAATTGGGAACCTCGTATTTGATTATGGGCTCCAATCGCAA
AGCGTTTGATATTCACAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026113XLOC_026113Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042253-proteinTCONS_00042253-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042253-exon-sc0003311-1575043694:12633..12802TCONS_00042253-exon-sc0003311-1575043694:12633..12802Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1575043694:11932..12123TCONS_00042253-exon-sc0003311-1575043694:11932..12123Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1575043694:9001..9140TCONS_00042253-exon-sc0003311-1575043694:9001..9140Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1575043694:8624..8712TCONS_00042253-exon-sc0003311-1575043694:8624..8712Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1575043694:7925..8064TCONS_00042253-exon-sc0003311-1575043694:7925..8064Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1575043694:7340..7374TCONS_00042253-exon-sc0003311-1575043694:7340..7374Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1510915933:12633..12802TCONS_00042253-exon-sc0003311-1510915933:12633..12802Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1510915933:11932..12123TCONS_00042253-exon-sc0003311-1510915933:11932..12123Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1510915933:9001..9140TCONS_00042253-exon-sc0003311-1510915933:9001..9140Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1510915933:8624..8712TCONS_00042253-exon-sc0003311-1510915933:8624..8712Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1510915933:7925..8064TCONS_00042253-exon-sc0003311-1510915933:7925..8064Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1510915933:7340..7374TCONS_00042253-exon-sc0003311-1510915933:7340..7374Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1491911889:12633..12802TCONS_00042253-exon-sc0003311-1491911889:12633..12802Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1491911889:11932..12123TCONS_00042253-exon-sc0003311-1491911889:11932..12123Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1491911889:9001..9140TCONS_00042253-exon-sc0003311-1491911889:9001..9140Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1491911889:8624..8712TCONS_00042253-exon-sc0003311-1491911889:8624..8712Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1491911889:7925..8064TCONS_00042253-exon-sc0003311-1491911889:7925..8064Clytia hemisphaericaexon
TCONS_00042253-exon-sc0003311-1491911889:7340..7374TCONS_00042253-exon-sc0003311-1491911889:7340..7374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003311supercontigsc0003311:7340..12802 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.73228	4.80668	7.6252	7.8505	3.32736	2.56612	3.21246	2.34161	4.55856	5.21698	4.88429	5.89105	14.0822	5.90466	4.50669	6.00995	4.49167	4.42856	2.95068	6.38974	6.24961	7.00581	1.21587	0.7146	15.0572	20.4814
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR007803Asp/Arg/Pro-Hydrxlase
IPR011990TPR-like_helical_dom
IPR027443IPNS-like
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0018193peptidyl-amino acid modification
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018193 peptidyl-amino acid modification
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00042253 vs. Swiss-Prot (Human)
Match: ASPH (Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapiens GN=ASPH PE=1 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 6.934e-67
Identity = 111/253 (43.87%), Postives = 161/253 (63.64%), Query Frame = 3 
Query:    6 KQSERLIFFGKGRDSVNVLAKLAEHLPKDVDVLNKLGTSYLIMGSNRKAFDIHKKVISVDPGNGIANANIGYILKALQKYQEAIPYLEAGIESEDPETNQAKFYVFLGEAYTKSGRTDDAWKLYHQGAERGFFMSAAQRSTENAESKLRAQPWWTVEQSGYEKEIRKLEYYWKTMRDEANKILKQNKDRFPLEDEGLLDTGDWRQLTLYQRGQQNKKNCQLVPKTCEIISQFKQATGNIRGQIKFSIMTPGTH 764
            ++S+R  F G  R S+  L +L +  P D  + N LG  YL++G N  A  ++++V+SV P +G A  + G+ILKA  K  E+IPYL+ GIES DP T+  +FY  LG+A  + G   +A+K Y  G +RG F S  QRS  N  + L+AQPWWT +++GY + ++ LE  WK +RDE   ++ + K  F  EDE L + GDW Q TL+Q+G++N+  C+  PKTC ++ +F + TG  RGQIK+SIM PGTH
Sbjct:  425 RRSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRFYFHLGDAMQRVG-NKEAYKWYELGHKRGHFASVWQRSLYNV-NGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTH 675
The following BLAST results are available for this feature:
BLAST of TCONS_00042253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASPH6.934e-6743.87Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapi... [more]
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