TCONS_00042252 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042252
Unique NameTCONS_00042252
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042252 ID=TCONS_00042252|Name=TCONS_00042252|organism=Clytia hemisphaerica|type=transcript|length=387bp
NNTGCGTTTGTTGTTTTACCGAAGCTGTAACGATTACATGTCAAAAGGAA
AAGCGAGCAACAGAAGAACATAATAATCTGCCCTACACACTTGTATCACA
GAACCCGTTGGGACCTAACACGGGAAATTGCAATCGTAAATTTCTGTTGC
AAAATATCTTATAGGGGAAGAACATTTGGGGTTTAATTAATTCGGGGAAA
AATTGTGACGGGATAAACCGGGAATCAAACGCAAGTGTAATTTGATGATA
CTCTGTTTGGTTATTGTAAAGCCGCTGGTATATGTGGACATAAACGGATG
ATATACACTGTCCCGGACATTTACTGACACACATAGAcgtacatttttta
tatttcatatataatagaacacccctttctcagtgNN
Run BLAST on NCBI

transcript from alignment at sc0003310:10584..10970

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042252 ID=TCONS_00042252|Name=TCONS_00042252|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0003310:10584..10970 (Clytia hemisphaerica)
NNcactgagaaaggggtgttctattatatatgaaatataaaaaatgtacg
TCTATGTGTGTCAGTAAATGTCCGGGACAGTGTATATCATCCGTTTATGT
CCACATATACCAGCGGCTTTACAATAACCAAACAGAGTATCATCAAATTA
CACTTGCGTTTGATTCCCGGTTTATCCCGTCACAATTTTTCCCCGAATTA
ATTAAACCCCAAATGTTCTTCCCCTATAAGATATTTTGCAACAGAAATTT
ACGATTGCAATTTCCCGTGTTAGGTCCCAACGGGTTCTGTGATACAAGTG
TGTAGGGCAGATTATTATGTTCTTCTGTTGCTCGCTTTTCCTTTTGACAT
GTAATCGTTACAGCTTCGGTAAAACAACAAACGCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026112XLOC_026112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042252-exon-sc0003310-1491911889:10584..10970TCONS_00042252-exon-sc0003310-1491911889:10584..10970Clytia hemisphaericaexon
TCONS_00042252-exon-sc0003310-1510915933:10584..10970TCONS_00042252-exon-sc0003310-1510915933:10584..10970Clytia hemisphaericaexon
TCONS_00042252-exon-sc0003310-1575043694:10584..10970TCONS_00042252-exon-sc0003310-1575043694:10584..10970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003310supercontigsc0003310:10584..10970 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.354067	1.7003	2.00088	12.2976	10.8409	2.76121	4.79419	1.97373	1.33263	2.53154	2.36758	2.94028	2.86411	1.11929	1.51327	1.02772	0.613438	0.461748	2.04089	0.472477	1.56497	0	0	4.04966	4.09835	0.899768	0.488506	0.0176911	0.819526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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