TCONS_00042241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042241
Unique NameTCONS_00042241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042241 ID=TCONS_00042241|Name=TCONS_00042241|organism=Clytia hemisphaerica|type=transcript|length=323bp
ATAAAGTCGAAATCATTTCATCTGAAGCAAAACTTCAAGATCTTGGTTTT
GTGGACTACATTGAAAATCTTAATGCTCGACAACAATCAATGCTCAAGGA
CACATCGATCCACAACTTCATACCTTGGAGAGTAGTATGGAAGGCTTCAT
CTGTCACAACTCCTTGTAGAATCGTCTTCGATGGATCACACCCAACATCA
ACTGGCTTTAGCATCAACGATTTACTGGCTAAAGGTCACAATAGTCTCAA
TAAACTCCAGGAAATACTCATCCGTTGGACAATCCATCCCATCGGCTTTC
ATACTGACATTAGAAAAATGTAC
Run BLAST on NCBI

protein sequence of TCONS_00042241-protein

>TCONS_00042241-protein ID=TCONS_00042241-protein|Name=TCONS_00042241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
KVEIISSEAKLQDLGFVDYIENLNARQQSMLKDTSIHNFIPWRVVWKASS
VTTPCRIVFDGSHPTSTGFSINDLLAKGHNSLNKLQEILIRWTIHPIGFH
TDIRKMY
Run BLAST on NCBI

transcript from alignment at sc0003304:12439..12761

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042241 ID=TCONS_00042241|Name=TCONS_00042241|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0003304:12439..12761 (Clytia hemisphaerica)
GTACATTTTTCTAATGTCAGTATGAAAGCCGATGGGATGGATTGTCCAAC
GGATGAGTATTTCCTGGAGTTTATTGAGACTATTGTGACCTTTAGCCAGT
AAATCGTTGATGCTAAAGCCAGTTGATGTTGGGTGTGATCCATCGAAGAC
GATTCTACAAGGAGTTGTGACAGATGAAGCCTTCCATACTACTCTCCAAG
GTATGAAGTTGTGGATCGATGTGTCCTTGAGCATTGATTGTTGTCGAGCA
TTAAGATTTTCAATGTAGTCCACAAAACCAAGATCTTGAAGTTTTGCTTC
AGATGAAATGATTTCGACTTTAT

Coding sequence (CDS) from alignment at sc0003304:12439..12761

>TCONS_00042241 ID=TCONS_00042241|Name=TCONS_00042241|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0003304:12439..12761 (Clytia hemisphaerica)
GTACATTTTTCTAATGTCAGTATGAAAGCCGATGGGATGGATTGTCCAAC
GGATGAGTATTTCCTGGAGTTTATTGAGACTATTGTGACCTTTAGCCAGT
AAATCGTTGATGCTAAAGCCAGTTGATGTTGGGTGTGATCCATCGAAGAC
GATTCTACAAGGAGTTGTGACAGATGAAGCCTTCCATACTACTCTCCAAG
GTATGAAGTTGTGGATCGATGTGTCCTTGAGCATTGATTGTTGTCGAGCA
TTAAGATTTTCAATGTAGTCCACAAAACCAAGATCTTGAAGTTTTGCTTC
AGATGAAATGATTTCGACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026101XLOC_026101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042241-exon-sc0003304-1491911889:12439..12761TCONS_00042241-exon-sc0003304-1491911889:12439..12761Clytia hemisphaericaexon
TCONS_00042241-exon-sc0003304-1510915933:12439..12761TCONS_00042241-exon-sc0003304-1510915933:12439..12761Clytia hemisphaericaexon
TCONS_00042241-exon-sc0003304-1575043694:12439..12761TCONS_00042241-exon-sc0003304-1575043694:12439..12761Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042241-proteinTCONS_00042241-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003304supercontigsc0003304:12439..12761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.274384	1.28241	0.617778	0	0.419647	0.663222	0.800149	1.12364	0.262228	0.520029	0	0.414492	0.626533	0	1.33905	0.189626	0.700811	0.851311	0.330794	1.38461	0.845337	2.48248	0	1.35991	8.92289	3.27997	0	0.910757	2.88518	1.72135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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