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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042240 ID=TCONS_00042240|Name=TCONS_00042240|organism=Clytia hemisphaerica|type=transcript|length=1276bp
CGCGCCATAACTTAGTTCCTAGAATCTTTTGTGAGATTGCCATAATTCAA
TGCTTTTTCCTAAACTTTCAGTATTACTCAATGAAGGTGTCACCATTTCA
TGCTATATAACGAAAATGTCTAAAAATCGAGGGAAATTGAGAGAATTCTA
CACGACTCTGGACGATTGTGGAGTAAATCagccaccattatggaaaaagA
TTTCCGACAATTTCAGTTTATCAAGAGAAAGAGATGAAAGCAAATcagaa
atgaagattttcacCGCTTTGGAGATTCAAAGGTTTTCACCACATTGTTT
CTATGAAATAGGAGTCAGAATTGTCGTTTTTCTCAAACAGCGTAAAGTCA
GCGTCAAAGAAATACACAATGGTATAAAAGAGAAGTTACCAGGTCGGCTT
GATTTGCTGAAATATTTGGAGCCATTTGTAGAGAAGAATTGCATTTCTGC
GTTATCAGAAGAAGAACAGGAACCGTTCAAAGTGATGCTCGGAAGTTGCC
GAGTGAGGGACGATGACTGGCGGACTTTTTGCTCTCATATTGTTAAACTG
GAAGATCACGAGATTACAAAAATTAGTCAAGTAAAAAACCTTCAGAGAAA
CGTTTCACCCTCCGAAGAAATGGTTAAAAGAATGATTCAAAGCAAACCTG
ACATGTCACTCTATAAATTCCATCAGGTTTTGCATGGAGTGAGTCAAGAG
GCAGCAAACATGATTTTTGACCACGTTGCTTTATTGTTGGgcgatcattt
gaaaaatgtaCCAGATGAAAAACCTGAGATTGAAAACATCTGAAACATCT
AAAAAGTGATTTGTCTTTGGAAAACTTAGTGCCAAACATTTCCATTTCAA
ACGAtaagacttttttttctttaaaacctttataattttgtacattttta
ttaagATATATGGCGTGTTTTAACGTTATGCACAATTTTAAATACAATGA
CTTGATGTCAAGTTGATGCCCACCTTTTGAGGAAAATTTTACattcccaa
attttttttggaatttatgaagaatttttacaatttaacaGACCTTTTAT
AGgacttttataagaattttatgtatattttggtttgttATCTTACTCGG
ACTTGCTGAATTGAAGGGCTCCTCAAACCGAGAAAGAACTCTCTTTTTGT
CTTGTAAATTTGATGATAGTTTAAGCATAGTATAGGAAAGTCGTGCGTTG
TACAAGCAAATAGTGCCTTTGCTTCCGaggttcttattttcttttctgGT
TCAGAAGTTAACTGGTTGCAGACACA Run BLAST on NCBI protein sequence of TCONS_00042240-protein >TCONS_00042240-protein ID=TCONS_00042240-protein|Name=TCONS_00042240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MLFPKLSVLLNEGVTISCYITKMSKNRGKLREFYTTLDDCGVNQPPLWKK
ISDNFSLSRERDESKSEMKIFTALEIQRFSPHCFYEIGVRIVVFLKQRKV
SVKEIHNGIKEKLPGRLDLLKYLEPFVEKNCISALSEEEQEPFKVMLGSC
RVRDDDWRTFCSHIVKLEDHEITKISQVKNLQRNVSPSEEMVKRMIQSKP
DMSLYKFHQVLHGVSQEAANMIFDHVALLLGDHLKNVPDEKPEIENI Run BLAST on NCBI transcript from alignment at sc0003302:9568..10843 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042240 ID=TCONS_00042240|Name=TCONS_00042240|organism=Clytia hemisphaerica|type=transcript|length=1276bp|location=Sequence derived from alignment at sc0003302:9568..10843 (Clytia hemisphaerica)
TGTGTCTGCAACCAGTTAACTTCTGAACcagaaaagaaaataagaacctC
GGAAGCAAAGGCACTATTTGCTTGTACAACGCACGACTTTCCTATACTAT
GCTTAAACTATCATCAAATTTACAAGACAAAAAGAGAGTTCTTTCTCGGT
TTGAGGAGCCCTTCAATTCAGCAAGTCCGAGTAAGATaacaaaccaaaat
atacataaaattcttataaaagtcCTATAAAAGGTCtgttaaattgtaaa
aattcttcataaattccaaaaaaaatttgggaatGTAAAATTTTCCTCAA
AAGGTGGGCATCAACTTGACATCAAGTCATTGTATTTAAAATTGTGCATA
ACGTTAAAACACGCCATATATcttaataaaaatgtacaaaattataaagg
ttttaaagaaaaaaaagtcttaTCGTTTGAAATGGAAATGTTTGGCACTA
AGTTTTCCAAAGACAAATCACTTTTTAGATGTTTCAGATGTTTTCAATCT
CAGGTTTTTCATCTGGtacatttttcaaatgatcgcCCAACAATAAAGCA
ACGTGGTCAAAAATCATGTTTGCTGCCTCTTGACTCACTCCATGCAAAAC
CTGATGGAATTTATAGAGTGACATGTCAGGTTTGCTTTGAATCATTCTTT
TAACCATTTCTTCGGAGGGTGAAACGTTTCTCTGAAGGTTTTTTACTTGA
CTAATTTTTGTAATCTCGTGATCTTCCAGTTTAACAATATGAGAGCAAAA
AGTCCGCCAGTCATCGTCCCTCACTCGGCAACTTCCGAGCATCACTTTGA
ACGGTTCCTGTTCTTCTTCTGATAACGCAGAAATGCAATTCTTCTCTACA
AATGGCTCCAAATATTTCAGCAAATCAAGCCGACCTGGTAACTTCTCTTT
TATACCATTGTGTATTTCTTTGACGCTGACTTTACGCTGTTTGAGAAAAA
CGACAATTCTGACTCCTATTTCATAGAAACAATGTGGTGAAAACCTTTGA
ATCTCCAAAGCGgtgaaaatcttcatttctgATTTGCTTTCATCTCTTTC
TCTTGATAAACTGAAATTGTCGGAAATctttttccataatggtggctGAT
TTACTCCACAATCGTCCAGAGTCGTGTAGAATTCTCTCAATTTCCCTCGA
TTTTTAGACATTTTCGTTATATAGCATGAAATGGTGACACCTTCATTGAG
TAATACTGAAAGTTTAGGAAAAAGCATTGAATTATGGCAATCTCACAAAA
GATTCTAGGAACTAAGTTATGGCGCG Coding sequence (CDS) from alignment at sc0003302:9568..10843 >TCONS_00042240 ID=TCONS_00042240|Name=TCONS_00042240|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0003302:9568..10843 (Clytia hemisphaerica)
TCAGATGTTTTCAATCTCAGGTTTTTCATCTGGtacatttttcaaatgat
cgcCCAACAATAAAGCAACGTGGTCAAAAATCATGTTTGCTGCCTCTTGA
CTCACTCCATGCAAAACCTGATGGAATTTATAGAGTGACATGTCAGGTTT
GCTTTGAATCATTCTTTTAACCATTTCTTCGGAGGGTGAAACGTTTCTCT
GAAGGTTTTTTACTTGACTAATTTTTGTAATCTCGTGATCTTCCAGTTTA
ACAATATGAGAGCAAAAAGTCCGCCAGTCATCGTCCCTCACTCGGCAACT
TCCGAGCATCACTTTGAACGGTTCCTGTTCTTCTTCTGATAACGCAGAAA
TGCAATTCTTCTCTACAAATGGCTCCAAATATTTCAGCAAATCAAGCCGA
CCTGGTAACTTCTCTTTTATACCATTGTGTATTTCTTTGACGCTGACTTT
ACGCTGTTTGAGAAAAACGACAATTCTGACTCCTATTTCATAGAAACAAT
GTGGTGAAAACCTTTGAATCTCCAAAGCGgtgaaaatcttcatttctgAT
TTGCTTTCATCTCTTTCTCTTGATAAACTGAAATTGTCGGAAATcttttt
ccataatggtggctGATTTACTCCACAATCGTCCAGAGTCGTGTAGAATT
CTCTCAATTTCCCTCGATTTTTAGACATTTTCGTTATATAGCATGAAATG
GTGACACCTTCATTGAGTAATACTGAAAGTTTAGGAAAAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042240-exon-sc0003302-1491911889:9568..10843 | TCONS_00042240-exon-sc0003302-1491911889:9568..10843 | Clytia hemisphaerica | exon |
| TCONS_00042240-exon-sc0003302-1510915933:9568..10843 | TCONS_00042240-exon-sc0003302-1510915933:9568..10843 | Clytia hemisphaerica | exon |
| TCONS_00042240-exon-sc0003302-1575043694:9568..10843 | TCONS_00042240-exon-sc0003302-1575043694:9568..10843 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003302 | supercontig | sc0003302:9568..10843 . |
Blast
The following BLAST results are available for this feature:
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