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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042237 ID=TCONS_00042237|Name=TCONS_00042237|organism=Clytia hemisphaerica|type=transcript|length=1203bp
aagccaaaacATAATTTCCAGAACTTAGAGCTGGCATTTGTTCATCTTCc
aaattcattaaaaagttctcatgaaAGGTTTTTGAAGTCTGATTGCAAAA
AGTATCAAANAAAACATAATTTCCAGAACTTAGAGCTGGCATTTGTTCAT
CTTCCAAatccattaaaaagttctcatgaaAGGTTTTTGAAGTCTGATTG
CAAAAAGTATCAACCCAAAAAAATGATCATGTTGAAACCCTTAAAAAAGC
TCAACAGACATAAAATGTCACcaatattttatccaaaaagagtATCTAaa
tatccaacaatacaaagAGAGCCTAAAATAGTCAACCTCTTAGTGGTTGA
ATCAAATTTTTTGTCGGTTGAAAGACATTTCGCACACGTTAAGTTATAAT
TATTCTGATAAAATGCTTCATTCCTGCTAATAATCAAGCAGATAGCAAGA
GAGAAGTAATCATTACATAAGAGAACATACCTGTAATAAGGCCAAGGCTT
AAAAACTCGGAGAAATTCTAAATATCTCTATCTATCAGTGTCTATGTCTC
TCTATTTTTGTAGGCCCTCTGCACAGGGCAATGATGACGTTATCGGGGGC
GATCGGGGGAAGGCttcaatttttgggaaaaaaaacaaaaaacggttTAC
GTGaggtttcttttaaaaaaatattacacgaATTGGGTTCAAAATGTAAT
GTATCAAAAAGCTTTCGTCTTTAGtgtattatttacaaatttataaCAAC
GTCATGGCTATTTGTAAGATTGTGGTACATAtttccaattttcagaaaat
caatTGAAACACAAAGTTCGTCGAAAAAACACAACTGATCGGGTCGAGTT
CAAGAATGGGCTTGAACCATACGTGGCTAAGGTATGTTCTTTGTTCACAG
AAAATGACACATGTATAAAGTGCAGGTTTATAGGAAAAAATTCGACTACA
CTGCACCACAAGTCTTTTTCGGGAAGCTACTCAGCCCAATCACAATCTTG
AAGCTTTAGGAAAAAGTCTACATGTAAATCCTTGATTTTACTCTTGACAT
CTGATTCGTATTCTTGTTTAAATCTTGGGTATTTCGGTAGTAACTTCTCA
ATCTGTGCAACAAGTTCactataaaatgaaaatgtcaTAGAAATGTCAGA
TAGGGAGCATTTAAAGTGACATAACTGGATTATTGGGTAATTTATGAGTt
gtt Run BLAST on NCBI protein sequence of TCONS_00042237-protein >TCONS_00042237-protein ID=TCONS_00042237-protein|Name=TCONS_00042237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
KPKHNFQNLELAFVHLPNSLKSSHERFLKSDCKKYQXKHNFQNLELAFVH
LPNPLKSSHERFLKSDCKKYQPKKMIMLKPLKKLNRHKMSPIFYPKRVSK
YPTIQREPKIVNLLVVESNFLSVERHFAHVKL Run BLAST on NCBI transcript from alignment at sc0003298:11603..12805 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042237 ID=TCONS_00042237|Name=TCONS_00042237|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at sc0003298:11603..12805 (Clytia hemisphaerica)
aacaACTCATAAATTACCCAATAATCCAGTTATGTCACTTTAAATGCTCC
CTATCTGACATTTCTAtgacattttcattttatagtGAACTTGTTGCACA
GATTGAGAAGTTACTACCGAAATACCCAAGATTTAAACAAGAATACGAAT
CAGATGTCAAGAGTAAAATCAAGGATTTACATGTAGACTTTTTCCTAAAG
CTTCAAGATTGTGATTGGGCTGAGTAGCTTCCCGAAAAAGACTTGTGGTG
CAGTGTAGTCGAATTTTTTCCTATAAACCTGCACTTTATACATGTGTCAT
TTTCTGTGAACAAAGAACATACCTTAGCCACGTATGGTTCAAGCCCATTC
TTGAACTCGACCCGATCAGTTGTGTTTTTTCGACGAACTTTGTGTTTCAa
ttgattttctgaaaattggaaaTATGTACCACAATCTTACAAATAGCCAT
GACGTTGttataaatttgtaaataatacaCTAAAGACGAAAGCTTTTTGA
TACATTACATTTTGAACCCAATtcgtgtaatatttttttaaaagaaacct
CACGTAaaccgttttttgttttttttcccaaaaattgaaGCCTTCCCCCG
ATCGCCCCCGATAACGTCATCATTGCCCTGTGCAGAGGGCCTACAAAAAT
AGAGAGACATAGACACTGATAGATAGAGATATTTAGAATTTCTCCGAGTT
TTTAAGCCTTGGCCTTATTACAGGTATGTTCTCTTATGTAATGATTACTT
CTCTCTTGCTATCTGCTTGATTATTAGCAGGAATGAAGCATTTTATCAGA
ATAATTATAACTTAACGTGTGCGAAATGTCTTTCAACCGACAAAAAATTT
GATTCAACCACTAAGAGGTTGACTATTTTAGGCTCTctttgtattgttgg
atattTAGATactctttttggataaaatattgGTGACATTTTATGTCTGT
TGAGCTTTTTTAAGGGTTTCAACATGATCATTTTTTTGGGTTGATACTTT
TTGCAATCAGACTTCAAAAACCTttcatgagaactttttaatggatTTGG
AAGATGAACAAATGCCAGCTCTAAGTTCTGGAAATTATGTTTTNTTTGAT
ACTTTTTGCAATCAGACTTCAAAAACCTttcatgagaactttttaatgaa
tttgGAAGATGAACAAATGCCAGCTCTAAGTTCTGGAAATTATgttttgg
ctt Coding sequence (CDS) from alignment at sc0003298:11603..12805 >TCONS_00042237 ID=TCONS_00042237|Name=TCONS_00042237|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0003298:11603..12805 (Clytia hemisphaerica)
TTATAACTTAACGTGTGCGAAATGTCTTTCAACCGACAAAAAATTTGATT
CAACCACTAAGAGGTTGACTATTTTAGGCTCTctttgtattgttggatat
tTAGATactctttttggataaaatattgGTGACATTTTATGTCTGTTGAG
CTTTTTTAAGGGTTTCAACATGATCATTTTTTTGGGTTGATACTTTTTGC
AATCAGACTTCAAAAACCTttcatgagaactttttaatggatTTGGAAGA
TGAACAAATGCCAGCTCTAAGTTCTGGAAATTATGTTTTNTTTGATACTT
TTTGCAATCAGACTTCAAAAACCTttcatgagaactttttaatgaatttg
GAAGATGAACAAATGCCAGCTCTAAGTTCTGGAAATTATgttttggctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042237-exon-sc0003298-1491911889:11603..12805 | TCONS_00042237-exon-sc0003298-1491911889:11603..12805 | Clytia hemisphaerica | exon |
| TCONS_00042237-exon-sc0003298-1510915933:11603..12805 | TCONS_00042237-exon-sc0003298-1510915933:11603..12805 | Clytia hemisphaerica | exon |
| TCONS_00042237-exon-sc0003298-1575043694:11603..12805 | TCONS_00042237-exon-sc0003298-1575043694:11603..12805 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003298 | supercontig | sc0003298:11603..12805 . |
Blast
The following BLAST results are available for this feature:
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