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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042234 ID=TCONS_00042234|Name=TCONS_00042234|organism=Clytia hemisphaerica|type=transcript|length=1385bp
GTTATAACTCTTTTCTGACGAAcaaaaaacatacaattttCATCTAATTG
TCGACCAATAATTGCATGAAATGTGAGGCTAACACTTCAACTGTAATCAT
CAGtaatttcaagagtttttcataattgattacaaagatatccATGGATT
ACCTCTTCCgaataccaaaccaaccaacttaAAGCTTCCAGAGACATTTG
CTTGACATGAAGAAAACGCTACATCCCCATAACTTTGGACATTAAATGGT
TGGCAAAATGGTATTAACATTCTATTAGATGTGAAACTGGTtcaagttga
agaattgatgagaaaaatggGCAGTACGActacgagaaatatttttgctt
tgaaatacaAACTCTTATATGAACAATATCTCTGGAACAAGTTATACGAG
ATTTGTTTACCGAGTGAccccaaaacaaagtctttaatgCTTGGTTCTTA
CATGAGGTCAGAGGTTTTGtggattttctaaacttttgaaacttgtgtga
ttgttttggttgttttcctgaCTAAAGACACTTTTGAATGTGTGATTGTT
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGtggatttt
ctaaacttttgaaacttgtgtgattgttttggttgttttcctgaCTAAAG
ACACTTTTGAATGTGTGATTGTTTTCCCTGACTAGAGATATTGTGAGCGT
GTATTTAATAAACATATTGCATCTTGGCTCGGAgtatatttttgaatgtt
ttagcGGCGACGTCATTTCTTGTTTGGATTGTTGTAGTGTTATCTTTTAG
TGCTCCAATGTTTCGTACAcggcaaaaatataaaccttgtctgcttgagc
agattgatttacattctcgacAAAGAAGTCGATTGAAAAACTATTGTCCA
ATATTTCAGGTTGATatataccgtgaaaaagggtaacttgcatcagtgga
ggctaacatgcatataccCCAATTCACAGACTTGTCTGGTCATGGTTTTC
TCACCTTGTaatatgaaaatcaaatttaagaaaacatGTAATTAATTGAG
GAAAGATAATTATAATTACCATGAATTGCGTTTCCCAAATGACCTCACTT
TTACATGCTTCATAATCTGACATCttgttatttagaattttcaaaagaat
aagTCGCGATTACGTCATTAGTCCAAAATATGATTGGCTGATAGATATGA
GCCTGGTTTCCCCATCCACTCGGTAAAATATCCACCACCCTTCAGCCAGC
CTTGAGAGACAGGGGCGGCaaaaaaaagtaagtacgcAACCTTATGGAAA
CCATcccattttgacattttttttaaacaagtgGCGAAAACGGGGGAGAG
TGTGCAGAGGAGAGTAGGCAAAAGACATTTACAAT Run BLAST on NCBI protein sequence of TCONS_00042234-protein >TCONS_00042234-protein ID=TCONS_00042234-protein|Name=TCONS_00042234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MTSPLKHSKIYSEPRCNMFIKYTLTISLVRENNHTFKSVFSQENNQNNHT
SFKSLENPQXXXXXXXXXXXXXNNHTFKSVFSQENNQNNHTSFKSLENPQ
NL Run BLAST on NCBI transcript from alignment at sc0003297:919..2303 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042234 ID=TCONS_00042234|Name=TCONS_00042234|organism=Clytia hemisphaerica|type=transcript|length=1385bp|location=Sequence derived from alignment at sc0003297:919..2303 (Clytia hemisphaerica)
ATTGTAAATGTCTTTTGCCTACTCTCCTCTGCACACTCTCCCCCGTTTTC
GCcacttgtttaaaaaaaatgtcaaaatgggATGGTTTCCATAAGGTTgc
gtacttacttttttttGCCGCCCCTGTCTCTCAAGGCTGGCTGAAGGGTG
GTGGATATTTTACCGAGTGGATGGGGAAACCAGGCTCATATCTATCAGCC
AATCATATTTTGGACTAATGACGTAATCGCGActtattcttttgaaaatt
ctaaataacaaGATGTCAGATTATGAAGCATGTAAAAGTGAGGTCATTTG
GGAAACGCAATTCATGGTAATTATAATTATCTTTCCTCAATTAATTACat
gttttcttaaatttgattttcatattACAAGGTGAGAAAACCATGACCAG
ACAAGTCTGTGAATTGGggtatatgcatgttagcctccactgatgcaagt
taccctttttcacggtatatATCAACCTGAAATATTGGACAATAGTTTTT
CAATCGACTTCTTTgtcgagaatgtaaatcaatctgctcaagcagacaag
gtttatatttttgccgTGTACGAAACATTGGAGCACTAAAAGATAACACT
ACAACAATCCAAACAAGAAATGACGTCGCCgctaaaacattcaaaaatat
acTCCGAGCCAAGATGCAATATGTTTATTAAATACACGCTCACAATATCT
CTAGTCAGGGAAAACAATCACACATTCAAAAGTGTCTTTAGtcaggaaaa
caaccaaaacaatcacacaagtttcaaaagtttagaaaatccaCAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAATCACACATTC
AAAAGTGTCTTTAGtcaggaaaacaaccaaaacaatcacacaagtttcaa
aagtttagaaaatccaCAAAACCTCTGACCTCATGTAAGAACCAAGcatt
aaagactttgttttggggTCACTCGGTAAACAAATCTCGTATAACTTGTT
CCAGAGATATTGTTCATATAAGAGTTtgtatttcaaagcaaaaatatttc
tcgtagTCGTACTGCccatttttctcatcaattcttcaacttgaACCAGT
TTCACATCTAATAGAATGTTAATACCATTTTGCCAACCATTTAATGTCCA
AAGTTATGGGGATGTAGCGTTTTCTTCATGTCAAGCAAATGTCTCTGGAA
GCTTtaagttggttggtttggtattcGGAAGAGGTAATCCATggatatct
ttgtaatcaattatgaaaaactcttgaaattaCTGATGATTACAGTTGAA
GTGTTAGCCTCACATTTCATGCAATTATTGGTCGACAATTAGATGaaaat
tgtatgttttttgTTCGTCAGAAAAGAGTTATAAC Coding sequence (CDS) from alignment at sc0003297:919..2303 >TCONS_00042234 ID=TCONS_00042234|Name=TCONS_00042234|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0003297:919..2303 (Clytia hemisphaerica)
ATGACGTCGCCgctaaaacattcaaaaatatacTCCGAGCCAAGATGCAA
TATGTTTATTAAATACACGCTCACAATATCTCTAGTCAGGGAAAACAATC
ACACATTCAAAAGTGTCTTTAGtcaggaaaacaaccaaaacaatcacaca
agtttcaaaagtttagaaaatccaCAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAACAATCACACATTCAAAAGTGTCTTTAGtcagg
aaaacaaccaaaacaatcacacaagtttcaaaagtttagaaaatccaCAA
AACCTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042234-exon-sc0003297-1491911889:919..2303 | TCONS_00042234-exon-sc0003297-1491911889:919..2303 | Clytia hemisphaerica | exon |
| TCONS_00042234-exon-sc0003297-1510915933:919..2303 | TCONS_00042234-exon-sc0003297-1510915933:919..2303 | Clytia hemisphaerica | exon |
| TCONS_00042234-exon-sc0003297-1575043694:919..2303 | TCONS_00042234-exon-sc0003297-1575043694:919..2303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003297 | supercontig | sc0003297:919..2303 . |
Blast
The following BLAST results are available for this feature:
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