TCONS_00042230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042230
Unique NameTCONS_00042230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042230 ID=TCONS_00042230|Name=TCONS_00042230|organism=Clytia hemisphaerica|type=transcript|length=270bp
GCTTGATCTTCTGATAAAAAATGTCTCACCCTTCTCAATGCCCTTAgttt
ttggttagattttttACATAATTCGGTTACGTGAGGAATAAAAGATAATT
TTGCATCGATTCTTATACCCAGAAGTTTCACGACATCGACGTTCTTAATG
TTGTTTTTACCAACAGGAAAAGAAACATCGGCGTTAAAAGTACCGGGGTA
AATAAGTTGAAACTTGGAGGGATTTGCAACCATTGAGTTATGCTTAAACC
AATCAAGAACAATGCTTAGT
Run BLAST on NCBI

transcript from alignment at sc0003295:2016..2285

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042230 ID=TCONS_00042230|Name=TCONS_00042230|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at sc0003295:2016..2285 (Clytia hemisphaerica)
ACTAAGCATTGTTCTTGATTGGTTTAAGCATAACTCAATGGTTGCAAATC
CCTCCAAGTTTCAACTTATTTACCCCGGTACTTTTAACGCCGATGTTTCT
TTTCCTGTTGGTAAAAACAACATTAAGAACGTCGATGTCGTGAAACTTCT
GGGTATAAGAATCGATGCAAAATTATCTTTTATTCCTCACGTAACCGAAT
TATGTaaaaaatctaaccaaaaacTAAGGGCATTGAGAAGGGTGAGACAT
TTTTTATCAGAAGATCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026090XLOC_026090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042230-exon-sc0003295-1491911889:2016..2285TCONS_00042230-exon-sc0003295-1491911889:2016..2285Clytia hemisphaericaexon
TCONS_00042230-exon-sc0003295-1510915933:2016..2285TCONS_00042230-exon-sc0003295-1510915933:2016..2285Clytia hemisphaericaexon
TCONS_00042230-exon-sc0003295-1575043694:2016..2285TCONS_00042230-exon-sc0003295-1575043694:2016..2285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003295supercontigsc0003295:2016..2285 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566726	0	0.641677	1.88334	3.82131	1.20786	0.728616	0.682122	3.34299	3.54928	0	0.754873	0.376912	0.391427	0.965418	1.38139	0	0	0	0	1.64383	0.801802	0.649797	0	0.608469	0	0	3.31734	1.25804	0.640874
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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