TCONS_00042229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042229
Unique NameTCONS_00042229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042229 ID=TCONS_00042229|Name=TCONS_00042229|organism=Clytia hemisphaerica|type=transcript|length=260bp
GTTTTCTGACAGTGTTGGAGATTTCTATCTCGGTAACCGATGGATGAGCA
ACATGTTGGGAGGAGGGAAAGTCAACAGGCTGATGGTTTTGGTTCGTAAA
GGAACAGAATGGTCGGgTGAGAAGTATGAAAAATTCAAGACGAAAGGTGA
CAAATACAACTACGAAGCCGTGATCAGTGACCCTGCAAAACCGCAAGATT
CCATTGCAGGGTGGCTTAGTCTCCACTTAAACGAGCAAAGAGAATTTATT
ACTATTGATC
Run BLAST on NCBI

transcript from alignment at sc0003295:8989..11036-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042229 ID=TCONS_00042229|Name=TCONS_00042229|organism=Clytia hemisphaerica|type=transcript|length=2048bp|location=Sequence derived from alignment at sc0003295:8989..11036- (Clytia hemisphaerica)
GTTTTCTGACAGTGTTGGAGATTTCTATCTCGGTAACCGATGGATGAGCA
ACATGTTGGGAGGAGGGAAAGTCAACAGGCTGATGGTTTTGGTTCGTAAA
GGAACAGAATGGTCGGGTAGGAAGTTTTACAAGCTTTTCTATTATATACC
GGGTGCACCACAAAAACGTATAAGGACATGTTTTTTTTTACTGTACCAAA
ATGCCGATTTTCAACCAACCCGGTTCAAATCGGCACTAACAGAGACAGCT
GAACCCTTTTTTATCGTTATTCAAAAGTAAGAAAATAGATTAGTAGCTCT
GTCCGATACTTTTTGTCCAATATTAATAGCTTTTATGGAACTTAAGATAT
CGCTTGTTGAATCTGGAGTATTTCAGGATGAAAAAAATCATAGTCTATTT
CGGATTTATAAAGTCGGCTCTATATTTGGCCTTTGTCTTGTCCAATTTAT
ATACGAAACTTATATCAGGGTGTAGCTAAAGGATTGAATTTTCACATCGA
CCTCTTTTTTTTGGAAAAAAACCGGAGGAAAATGGGATCAAATTGATCAT
TTTTGAAATCTAAGTGCTAATTCTAATCGTATATATTTTCCTGACAAGTC
TATCTATCGGGGAAGTGATTTGAGATTTTTGTTTAGTTGATAAGAAAGGA
ACGAACTAAAGAAAACGGGGATTGTTAAAATGAGTGAAAAATGATTAAAA
AAGTCCTTTGTTTGTTTTTATCATAACTCACTCCGACCTTTGAAAAAATT
ACTCCTCAGGCTATTTTATGATTTTAGGCTACCTCAGGAATGCATAGAAA
GCTCCTCAGGACCGAATAATGAGTCATTGAGTGAGATATGATCCAAAACA
CTCCATGATTAATTAATCCTGAAATACTCCGAATTTTTAAATTTCAAATA
GCTCATTTTAAAGCCCTTCGCAAATTTCAATACATATCAAAATTTTGGGA
AAATTCATCATGCGAATGACGAAATAATTAAAATAAAGTGATTTTCACGA
TTTTCGAAAACCTGATTTTGGTACAGGCAAAAAAAAACATGTCCATAACG
CTTATATTAAAACAATTTAACATTAGATTTTATCGATTCCTATGAGGTCG
TTTATGTGCACTCTCTGAAAGAAACTTGTTTGTTCATCCAGGTTCATCGA
AGCATAACACAAATTCTATAAATGACACATCAAAATGTTAGTTAAAAGTT
GAGAAAGCGAAATTCAATTTTTTAAACTTTTCATGGTTAACGCTGTTGAC
GTTATAAACATTAAGAAATAGACTTGCCATTGTAATTTTTATAACAACAA
AACATCACTCATGAAAAGGTTTTTAATTTGATTTGAAGCTTGGAAAATCT
AAAGACCAACCAGCAGTATTTTCATTTATTTTTGGCTTTTCGTTTTCTTT
CAACCGATGTCAATTGAATATGTTTCAAAATTAACCAATGCCATATCCAA
CTTTTAAATAAGGGTGATTGAAATTAATCTGGTTGATTATAACAAAAACN
AGCAGTATTTTCATTTATTTTTCGTTTTTCGTTTTCTTTCAACCGATGTC
AATTGAATATGTTTCAAAATTAACCAATGCCATATCCAACTTTTAAATAA
GGGTGATTGAAATTAATCTGGTTGATTATAACAAAAACCATCCGTACGAG
GAGATATGTCATTTTTTAATGATTTCTATATTTTGACTTTTGACCCCCAA
AAATATTGTGTAAGGGCTTGTATATAAAAGGGCGGATAAGGTTTATAGTA
ATCTCTCCCTAATTCGAACCCGCTGTAATTCGAATCTTTCTATAATTCGA
ACTAAAACATTGGTCCCCTTAGTTGGAAAGTGGTATAAAAACGCTCTTTA
ATTCGAAGATCGAATTAGGGAGTGGCAACAGTATATCTTTTTCATTTCTT
TCAGGTGAGAAGTATGAAAAATTCAAGACGAAAGGTGACAAATACAACTA
CGAAGCCGTGATCAGTGACCCTGCAAAACCGCAAGATTCCATTGCAGGGT
GGCTTAGTCTCCACTTAAACGAGCAAAGAGAATTTATTACTATTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026089XLOC_026089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042229-exon-sc0003295-1575043694:10921..11036TCONS_00042229-exon-sc0003295-1575043694:10921..11036Clytia hemisphaericaexon
TCONS_00042229-exon-sc0003295-1575043694:8989..9132TCONS_00042229-exon-sc0003295-1575043694:8989..9132Clytia hemisphaericaexon
TCONS_00042229-exon-sc0003295-1510915933:10921..11036TCONS_00042229-exon-sc0003295-1510915933:10921..11036Clytia hemisphaericaexon
TCONS_00042229-exon-sc0003295-1510915933:8989..9132TCONS_00042229-exon-sc0003295-1510915933:8989..9132Clytia hemisphaericaexon
TCONS_00042229-exon-sc0003295-1491911889:10921..11036TCONS_00042229-exon-sc0003295-1491911889:10921..11036Clytia hemisphaericaexon
TCONS_00042229-exon-sc0003295-1491911889:8989..9132TCONS_00042229-exon-sc0003295-1491911889:8989..9132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003295supercontigsc0003295:8989..11036 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78873	1.09024	2.79942	0	0	0	0	0	0	1.67481	0	0.722907	0	2.62301	0	0	0	0	0	0	0	0	1.91592	3.02882	1.40967	0	0	0	0	0.742372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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