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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042227 ID=TCONS_00042227|Name=TCONS_00042227|organism=Clytia hemisphaerica|type=transcript|length=1320bp
GTTATTGCTTACTTTTAAAGCGTGTCTCCCGAACCACCATTTTAAGGATG
ACTAAACTTCAAATACTTTTTAGCTATTAAACAACCTACAGTGATTTCCC
ATTCTCTCTTTTTTCACAGTTCAAACAACGCTTTTGAGGATGCTGACAAA
TCATACAATCATCTGGATAACGAACAATTAGTGAAACTTCTCCGAGAAAT
GGATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCAT
GTGTCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGA
GATAAGGCGATTCAACCTTCAGGAGATAACGTGGCTCAGAATTTGGGAGT
TACCGCAACTCTGGATTCAGGAGATAAGGAAACATTAACTATATTATCTA
CTGATAGAAATGAAGTCTTACCTTGTGGAGATAACAAAATCGTAGAATCA
GAAGATTCCTTGCAAACTATCGAGTCTGAAAAGGGTCAAAGTGGACGCAT
AGAGACTTTAAGTGAAATTGGAACTAAGAAGAATTCTGACCAAACACGTA
TTCAAGATATTGAAATGGACGAATCAAATCACAGTACCGATACGAACAGC
CAATCAGATCGTAGTACCGTTGGTCTCAGCCAATCAGTGTGTACTGCGGA
TTTGAACGACCAATCAGAAGCGGATACGGAAACGGCCGACGAACAAGGCG
ACGAGTCATCGGCAACACTCGTTAGTAATACCGAcgaattaaaaatcaaa
accgAGAACGAAGACTCGCATCAGActcttgaaaatgaaatgaaaactga
aaataataataGCGACAATGAATATAGACCTTTGGCTACGTTCGGTAAAT
TACCACCACTCTCATTCGAGGGATTGGATCAAGCGGCGATCGTAGGCCGT
TTCAAACTTTTACTTGAAGTGGAGAAAATAGAACATGAGATAGAAGAACA
AGTACAACAGTTGAACCAACATCTAGACGCTGAAGGATATGGCAAACAAA
AGACGAATTGGTTTACACTACCCAAATTTTAagctcaaaaatcgaagttt
tatgaattttggaacccttaccGGTacttttttccttaaatttagTCTCA
TTAGGAATAAATATTGTAGTATTTGGTACTTTTTTAATCCATAGGGGGTA
TTatatttttacgacccttaaaGGGATTTTGAAGgtccaaaaaggcaccc
ttaagacCTCAAGGGCGGTTCATACCCGTATtctcacacccctgtctcac
ggCCTCGGTGGAagtttttccctcagtggggataaaacaTTTTATTGAAA
GCCCAATGggggagtctgct Run BLAST on NCBI protein sequence of TCONS_00042227-protein >TCONS_00042227-protein ID=TCONS_00042227-protein|Name=TCONS_00042227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MDSSNEQYKTVENQTPPCVSTSQIQRSGSQEAGGDKAIQPSGDNVAQNLG
VTATLDSGDKETLTILSTDRNEVLPCGDNKIVESEDSLQTIESEKGQSGR
IETLSEIGTKKNSDQTRIQDIEMDESNHSTDTNSQSDRSTVGLSQSVCTA
DLNDQSEADTETADEQGDESSATLVSNTDELKIKTENEDSHQTLENEMKT
ENNNSDNEYRPLATFGKLPPLSFEGLDQAAIVGRFKLLLEVEKIEHEIEE
QVQQLNQHLDAEGYGKQKTNWFTLPKF Run BLAST on NCBI transcript from alignment at sc0003295:4495..6719- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042227 ID=TCONS_00042227|Name=TCONS_00042227|organism=Clytia hemisphaerica|type=transcript|length=2225bp|location=Sequence derived from alignment at sc0003295:4495..6719- (Clytia hemisphaerica)
GTTATTGCTTACTTTTAAAGCGTGTCTCCCGAACCACCATTTTAAGGATG
ACTAAACTTCAAATACTTTTTAGCTATTAAACAACCTACAGTGATTTCCC
ATTCTCTCTTTTTTCACAGTTCAAACAACGCTTTTGAGGATGCTGACAAA
TCATACAATCATCTGGATAACGAACAATTAGTGAAACTTCTCCGAGAAAT
GGATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCAT
GTGTCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGA
GATAAGGCGATTCAACCTTCAGGAGATAACGTGGCTCAGAATTTGGGAGT
TACCGCAACTCTGGATTCAGGAGATAAGGAAACATTAACTATATTATCTA
CTGATAGAAATGAAGTCTTACCTTGTGGAGATAACAAAATCGTAGAATCA
GAAGATTCCTTGCAAACTATCGAGTCTGAAAAGGGTCAAAGTGGACGCAT
AGAGACTTTAAGTGAAATTGGAACTAAGAAGAATTCTGACCAAACACGTA
TTCAAGATATTGAAATGGACGAATCAAATCACAGTACCGATACGAACAGC
CAATCAGATCGTAGTACCGTTGGTCTCAGCCAATCAGTGTGTACTGCGGA
TTTGAACGACCAATCAGAAGCGGATACGGAAACGGCCGACGAACAAGGCG
ACGAGTCATCGGCAACACTCGTTAGTAATACCGACGAATTAAAAATCAAA
ACCGAGAACGAAGACTCGCATCAGACTCTTGAAAATGAAATGAAAACTGA
AAATAATAATAGCGACAATGAATATAGACCTTTGGCTACGTTCGGTAAAT
TACCACCACTCTCATTCGAGGGATTGGATCAAGCGGCGATCGTAGGCCGT
TTCAAACTTTTACTTGAAGTGGAGAAAATAGAACATGAGATAGAAGAACA
AGTACAACAGTTGAACCAACATCTAGACGGTAAGTGATTTGCCAGCTGTT
TATTTGCATTCTCAAGTGTCCATCAGTAACCCATCAACCTAGCTTGTTTT
CAATTTTTTATATTAAGGCCGGCGCAAATGAATCCAACATTCAATCCAAC
ATTTCCAATTCATTGATAGACAAAATGTTGGACGAAAAGTCACGTGGAAA
AATTCGAAAATTTGCATGAAAAGTCATTTGTGCAAAAACGTCAAACATTT
TCATCCGACATGATTACGCAAATGCATCCAACATTGAAACCAACATAAAA
GTGACGTCAATCTCATAAAAAATGTTGGATGAAAAGTTTGATAGCGATCA
AACTTCATCCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCA
ACAATTTTCTTAAAAAGTTGCAATTTTATGACTTGCACAAATGAACCCAA
CATTTGATCCAACAATAATGTTGGATCAAATGTTGGATTCATTTGCACCG
GCCTTTACAGTGAACTTCTAATTTAATGGGAGCATTGAAAGTGCCAATTA
TTTTCCTAAATTTTGAAAATTGAAAAAATGTGAAATTTTGAACGTATGGA
AAATGTCCAGACTCCAATCTTAGTATCAAAAGTGCCAACTTAATAATTTC
TTTTCAATCCCATCAAAATCCTTTGATAGTTTCTGCGGAACTCGTACTGT
TGAAGGCATGTAATTTACAAATGTTTATTCTACGGTTATTTTTTTAACAA
TTTTTGAAATTATTTTTCTCAAATATTTAAATGCTCTGGATTACATCTTC
AACTCTAAATAATATGCCAGAATTGAACCCTTAGCTGAAGGATATGGCAA
ACAAAAGACGAATTGGTTTACACTACCCAAATTTTAAGCTCAAAAATCGA
AGTTTTATGAATTTTGGAACCCTTACCGGTACTTTTTTCCTTAAATTTAG
TCTCATTAGGAATAAATATTGTAGTATTTGGTACTTTTTTAATCCATAGG
GGGTATTATATTTTTACGACCCTTAAAGGGATTTTGAAGGTCCAAAAAGG
CACCCTTAAGACCTCAAGGGCGGTTCATACCCGTATTCTCACACCCCTGT
CTCACGGCCTCGGTGGAAGTTTTTCCCTCAGTGGGGATAAAACATTTTAT
TGAAAGCCCAATGGGGGAGTCTGCT Coding sequence (CDS) from alignment at sc0003295:4495..6719- >TCONS_00042227 ID=TCONS_00042227|Name=TCONS_00042227|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at sc0003295:4495..6719- (Clytia hemisphaerica)
CTGAAGGATATGGCAAACAAAAGACGAATTGGTTTACACTACCCAAATTT
TAAATGGATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCC
TCCATGTGTCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGG
GAGGAGATAAGGCGATTCAACCTTCAGGAGATAACGTGGCTCAGAATTTG
GGAGTTACCGCAACTCTGGATTCAGGAGATAAGGAAACATTAACTATATT
ATCTACTGATAGAAATGAAGTCTTACCTTGTGGAGATAACAAAATCGTAG
AATCAGAAGATTCCTTGCAAACTATCGAGTCTGAAAAGGGTCAAAGTGGA
CGCATAGAGACTTTAAGTGAAATTGGAACTAAGAAGAATTCTGACCAAAC
ACGTATTCAAGATATTGAAATGGACGAATCAAATCACAGTACCGATACGA
ACAGCCAATCAGATCGTAGTACCGTTGGTCTCAGCCAATCAGTGTGTACT
GCGGATTTGAACGACCAATCAGAAGCGGATACGGAAACGGCCGACGAACA
AGGCGACGAGTCATCGGCAACACTCGTTAGTAATACCGACGAATTAAAAA
TCAAAACCGAGAACGAAGACTCGCATCAGACTCTTGAAAATGAAATGAAA
ACTGAAAATAATAATAGCGACAATGAATATAGACCTTTGGCTACGTTCGG
TAAATTACCACCACTCTCATTCGAGGGATTGGATCAAGCGGCGATCGTAG
GCCGTTTCAAACTTTTACTTGAAGTGGAGAAAATAGAACATGAGATAGAA
GAACAAGTACAACAGTTGAACCAACATCTAGACGCTGAAGGATATGGCAA
ACAAAAGACGAATTGGTTTACACTACCCAAATTTTAAATGGATTCTTCTA
ATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCATGTGTCAGCACA
TCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGAGATAAGGCGAT
TCAACCTTCAGGAGATAACGTGGCTCAGAATTTGGGAGTTACCGCAACTC
TGGATTCAGGAGATAAGGAAACATTAACTATATTATCTACTGATAGAAAT
GAAGTCTTACCTTGTGGAGATAACAAAATCGTAGAATCAGAAGATTCCTT
GCAAACTATCGAGTCTGAAAAGGGTCAAAGTGGACGCATAGAGACTTTAA
GTGAAATTGGAACTAAGAAGAATTCTGACCAAACACGTATTCAAGATATT
GAAATGGACGAATCAAATCACAGTACCGATACGAACAGCCAATCAGATCG
TAGTACCGTTGGTCTCAGCCAATCAGTGTGTACTGCGGATTTGAACGACC
AATCAGAAGCGGATACGGAAACGGCCGACGAACAAGGCGACGAGTCATCG
GCAACACTCGTTAGTAATACCGACGAATTAAAAATCAAAACCGAGAACGA
AGACTCGCATCAGACTCTTGAAAATGAAATGAAAACTGAAAATAATAATA
GCGACAATGAATATAGACCTTTGGCTACGTTCGGTAAATTACCACCACTC
TCATTCGAGGGATTGGATCAAGCGGCGATCGTAGGCCGTTTCAAACTTTT
ACTTGAAGTGGAGAAAATAGAACATGAGATAGAAGAACAAGTACAACAGT
TGAACCAACATCTAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042227-exon-sc0003295-1575043694:5741..6719 | TCONS_00042227-exon-sc0003295-1575043694:5741..6719 | Clytia hemisphaerica | exon |
| TCONS_00042227-exon-sc0003295-1575043694:4495..4835 | TCONS_00042227-exon-sc0003295-1575043694:4495..4835 | Clytia hemisphaerica | exon |
| TCONS_00042227-exon-sc0003295-1510915933:5741..6719 | TCONS_00042227-exon-sc0003295-1510915933:5741..6719 | Clytia hemisphaerica | exon |
| TCONS_00042227-exon-sc0003295-1510915933:4495..4835 | TCONS_00042227-exon-sc0003295-1510915933:4495..4835 | Clytia hemisphaerica | exon |
| TCONS_00042227-exon-sc0003295-1491911889:5741..6719 | TCONS_00042227-exon-sc0003295-1491911889:5741..6719 | Clytia hemisphaerica | exon |
| TCONS_00042227-exon-sc0003295-1491911889:4495..4835 | TCONS_00042227-exon-sc0003295-1491911889:4495..4835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003295 | supercontig | sc0003295:4495..6719 - |
Blast
The following BLAST results are available for this feature:
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