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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042226 ID=TCONS_00042226|Name=TCONS_00042226|organism=Clytia hemisphaerica|type=transcript|length=1334bp
GTTATTGCTTACTTTTAAAGCGTGTCTCCCGAACCACCATTTTAAGGATG
ACTAAACTTCAAATACTTTTTAGCTATTAAACAACCTACAGTGATTTCCC
ATTCTCTCTTTTTTCACAGTTCAAACAACGCTTTTGAGGATGCTGACAAA
TCATACAATCATCTGGATAACGAACAATTAGTGAAACTTCTCCGAGAAAT
GGATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCAT
GTGTCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGA
GATAAGGCGATTCAACCTTCAGGAGATAACGTGGCTCAGAATTTGGGAGT
TACCGCAACTCTGGATTCAGGAGATAAGGAAACATTAACTATATTATCTA
CTGATAGAAATGAAGTCTTACCTTGTGGAGATAACAAAATCGTAGAATCA
GAAGATTCCTTGCAAACTATCGAGTCTGAAAAGGGTCAAAGTGGACGCAT
AGAGACTTTAAGTGAAATTGGAACTAAGAAGAATTCTGACCAAACACGTA
TTCAAGATATTGAAATGGACGAATCAAATCACAGTACCGATACGAACAGC
CAATCAGATCGTAGTACCGTTGGTCTCAGCCAATCAGTGTGTACTGCGGA
TTTGAACGACCAATCAGAAGCGGATACGGAAACGGCCGACGAACAAGGCG
ACGAGTCATCGGCAACACTCGTTAGTAATACCGAcgaattaaaaatcaaa
accgAGAACGAAGACTCGCATCAGActcttgaaaatgaaatgaaaactga
aaataataataGCGACAATGAATATAGACCTTTGGCTACGTTCGGTAAAT
TACCACCACTCTCATTCGAGGGATTGGATCAAGCGGCGATCGTAGGCCGT
TTCAAACTTTTACTTGAAGTGGAGAAAATAGAACATGAGATAGAAGAACA
AGTACAACAGTTGAACCAACATCTAGACGAATTGAACCCTTAGCTGAAGG
ATATGGCAAACAAAAGACGAATTGGTTTACACTACCCAAATTTTAagctc
aaaaatcgaagttttatgaattttggaacccttaccGGTacttttttcct
taaatttagTCTCATTAGGAATAAATATTGTAGTATTTGGTACTTTTTTA
ATCCATAGGGGGTATTatatttttacgacccttaaaGGGATTTTGAAGgt
ccaaaaaggcacccttaagacCTCAAGGGCGGTTCATACCCGTATtctca
cacccctgtctcacggCCTCGGTGGAagtttttccctcagtggggataaa
acaTTTTATTGAAAGCCCAATGggggagtctgct Run BLAST on NCBI transcript from alignment at sc0003295:4495..6719- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042226 ID=TCONS_00042226|Name=TCONS_00042226|organism=Clytia hemisphaerica|type=transcript|length=2225bp|location=Sequence derived from alignment at sc0003295:4495..6719- (Clytia hemisphaerica)
GTTATTGCTTACTTTTAAAGCGTGTCTCCCGAACCACCATTTTAAGGATG
ACTAAACTTCAAATACTTTTTAGCTATTAAACAACCTACAGTGATTTCCC
ATTCTCTCTTTTTTCACAGTTCAAACAACGCTTTTGAGGATGCTGACAAA
TCATACAATCATCTGGATAACGAACAATTAGTGAAACTTCTCCGAGAAAT
GGATTCTTCTAATGAACAATACAAAACTGTTGAAAACCAGACTCCTCCAT
GTGTCAGCACATCTCAGATTCAACGTAGTGGATCCCAGGAAGCGGGAGGA
GATAAGGCGATTCAACCTTCAGGAGATAACGTGGCTCAGAATTTGGGAGT
TACCGCAACTCTGGATTCAGGAGATAAGGAAACATTAACTATATTATCTA
CTGATAGAAATGAAGTCTTACCTTGTGGAGATAACAAAATCGTAGAATCA
GAAGATTCCTTGCAAACTATCGAGTCTGAAAAGGGTCAAAGTGGACGCAT
AGAGACTTTAAGTGAAATTGGAACTAAGAAGAATTCTGACCAAACACGTA
TTCAAGATATTGAAATGGACGAATCAAATCACAGTACCGATACGAACAGC
CAATCAGATCGTAGTACCGTTGGTCTCAGCCAATCAGTGTGTACTGCGGA
TTTGAACGACCAATCAGAAGCGGATACGGAAACGGCCGACGAACAAGGCG
ACGAGTCATCGGCAACACTCGTTAGTAATACCGACGAATTAAAAATCAAA
ACCGAGAACGAAGACTCGCATCAGACTCTTGAAAATGAAATGAAAACTGA
AAATAATAATAGCGACAATGAATATAGACCTTTGGCTACGTTCGGTAAAT
TACCACCACTCTCATTCGAGGGATTGGATCAAGCGGCGATCGTAGGCCGT
TTCAAACTTTTACTTGAAGTGGAGAAAATAGAACATGAGATAGAAGAACA
AGTACAACAGTTGAACCAACATCTAGACGGTAAGTGATTTGCCAGCTGTT
TATTTGCATTCTCAAGTGTCCATCAGTAACCCATCAACCTAGCTTGTTTT
CAATTTTTTATATTAAGGCCGGCGCAAATGAATCCAACATTCAATCCAAC
ATTTCCAATTCATTGATAGACAAAATGTTGGACGAAAAGTCACGTGGAAA
AATTCGAAAATTTGCATGAAAAGTCATTTGTGCAAAAACGTCAAACATTT
TCATCCGACATGATTACGCAAATGCATCCAACATTGAAACCAACATAAAA
GTGACGTCAATCTCATAAAAAATGTTGGATGAAAAGTTTGATAGCGATCA
AACTTCATCCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCA
ACAATTTTCTTAAAAAGTTGCAATTTTATGACTTGCACAAATGAACCCAA
CATTTGATCCAACAATAATGTTGGATCAAATGTTGGATTCATTTGCACCG
GCCTTTACAGTGAACTTCTAATTTAATGGGAGCATTGAAAGTGCCAATTA
TTTTCCTAAATTTTGAAAATTGAAAAAATGTGAAATTTTGAACGTATGGA
AAATGTCCAGACTCCAATCTTAGTATCAAAAGTGCCAACTTAATAATTTC
TTTTCAATCCCATCAAAATCCTTTGATAGTTTCTGCGGAACTCGTACTGT
TGAAGGCATGTAATTTACAAATGTTTATTCTACGGTTATTTTTTTAACAA
TTTTTGAAATTATTTTTCTCAAATATTTAAATGCTCTGGATTACATCTTC
AACTCTAAATAATATGCCAGAATTGAACCCTTAGCTGAAGGATATGGCAA
ACAAAAGACGAATTGGTTTACACTACCCAAATTTTAAGCTCAAAAATCGA
AGTTTTATGAATTTTGGAACCCTTACCGGTACTTTTTTCCTTAAATTTAG
TCTCATTAGGAATAAATATTGTAGTATTTGGTACTTTTTTAATCCATAGG
GGGTATTATATTTTTACGACCCTTAAAGGGATTTTGAAGGTCCAAAAAGG
CACCCTTAAGACCTCAAGGGCGGTTCATACCCGTATTCTCACACCCCTGT
CTCACGGCCTCGGTGGAAGTTTTTCCCTCAGTGGGGATAAAACATTTTAT
TGAAAGCCCAATGGGGGAGTCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042226-exon-sc0003295-1575043694:5741..6719 | TCONS_00042226-exon-sc0003295-1575043694:5741..6719 | Clytia hemisphaerica | exon |
| TCONS_00042226-exon-sc0003295-1575043694:4495..4849 | TCONS_00042226-exon-sc0003295-1575043694:4495..4849 | Clytia hemisphaerica | exon |
| TCONS_00042226-exon-sc0003295-1510915933:5741..6719 | TCONS_00042226-exon-sc0003295-1510915933:5741..6719 | Clytia hemisphaerica | exon |
| TCONS_00042226-exon-sc0003295-1510915933:4495..4849 | TCONS_00042226-exon-sc0003295-1510915933:4495..4849 | Clytia hemisphaerica | exon |
| TCONS_00042226-exon-sc0003295-1491911889:5741..6719 | TCONS_00042226-exon-sc0003295-1491911889:5741..6719 | Clytia hemisphaerica | exon |
| TCONS_00042226-exon-sc0003295-1491911889:4495..4849 | TCONS_00042226-exon-sc0003295-1491911889:4495..4849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003295 | supercontig | sc0003295:4495..6719 - |
Blast
The following BLAST results are available for this feature:
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