TCONS_00042222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042222
Unique NameTCONS_00042222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042222 ID=TCONS_00042222|Name=TCONS_00042222|organism=Clytia hemisphaerica|type=transcript|length=543bp
AATCAGGCATTTGTATAAGTGTAGTGAAAAAACTTGTTGAACGGAGGTAA
GACATCACGTCTGACACTCTGGCTATAGATATGATTGCATCGATTTTGTT
AGCAATACCTGCTTTAGTTTTGTTATGGATGTTCATCACTTATGCTGTGC
ATTTGATCAGTCTGAGGAGATATCCGAAAGGACCATTCCCTTTACCTTTG
CTTGGAAATATTCTCTCATTAAGTGAAAGACCTTATTTGGATTTTATTGA
GCTTGCTAAAGTGTATGGTGATGTTTTTAGTATAAGTTTTGGTATGGAAC
GTGCGGTCATTCTAAATtcatatgacgtcatcaaagagGCTTTAATGACC
AGAGGTACTGACTTTGCGGGTAGACCCACAACCGACATACCAAACAAAAT
AATCAGTAGAAATTTCACAAATATCGCTCACCGGGATTATTCAAAAACAT
GGGCGTTTTTGAGAAAAGTTGCGTATAAAAGTTTACATGTCTATGGATCA
GGAATGAAGAGGCTTGAAGATTTGATCACAGAAGAAGTGGACA
Run BLAST on NCBI

protein sequence of TCONS_00042222-protein

>TCONS_00042222-protein ID=TCONS_00042222-protein|Name=TCONS_00042222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MIASILLAIPALVLLWMFITYAVHLISLRRYPKGPFPLPLLGNILSLSER
PYLDFIELAKVYGDVFSISFGMERAVILNSYDVIKEALMTRGTDFAGRPT
TDIPNKIISRNFTNIAHRDYSKTWAFLRKVAYKSLHVYGSGMKRLEDLIT
EEVD
Run BLAST on NCBI

transcript from alignment at sc0003290:8132..8971+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042222 ID=TCONS_00042222|Name=TCONS_00042222|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at sc0003290:8132..8971+ (Clytia hemisphaerica)
AATCAGGCATTTGTATAAGTGTAGTGAAAAAACTTGTTGAACGGAGGTAA
GACATCACGTCTGACACTCTGGCTATAGATATGATTGCATCGATTTTGTT
AGCAATACCTGCTTTAGTTTTGTTATGGATGTTCATCACTTATGCTGTGC
ATTTGATCAGTCTGAGGAGATATCCGAAAGGACCATTCCCTTTACCTTTG
CTTGGAAATATTCTCTCATTAAGTGAAAGACCTTATTTGGATTTTATTGA
GCTTGCTAAAGTGTATGGTGATGTTTTTAGTATAAGTTTTGGTAAGTCGG
TCACAATTACCTtttagatgaatttttgtgtagacttttgaaatttttga
aatttttgtttggacaaaatttcgcgaatcagcctctGTTGCTACAGTAA
TCACAATTCAATTTTGACTCCAAAGGTTGCAGTTAAAAAAGTTATGTTAC
GTAATGACTCCAAAAGATTACATAGTTTTAGCGAAAAGAGGATACGAGGA
TAACCTTATAGtcttttggcttaaaaaactcGTGGCTTGGTTTAAAATTT
ATAGCTCACTTGAATACTGTGCGTGATTTTTTTTATAGGTATGGAACGTG
CGGTCATTCTAAATtcatatgacgtcatcaaagagGCTTTAATGACCAGA
GGTACTGACTTTGCGGGTAGACCCACAACCGACATACCAAACAAAATAAT
CAGTAGAAATTTCACAAATATCGCTCACCGGGATTATTCAAAAACATGGG
CGTTTTTGAGAAAAGTTGCGTATAAAAGTTTACATGTCTATGGATCAGGA
ATGAAGAGGCTTGAAGATTTGATCACAGAAGAAGTGGACA

Coding sequence (CDS) from alignment at sc0003290:8132..8971+

>TCONS_00042222 ID=TCONS_00042222|Name=TCONS_00042222|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0003290:8132..8971+ (Clytia hemisphaerica)
ATGATTGCATCGATTTTGTTAGCAATACCTGCTTTAGTTTTGTTATGGAT
GTTCATCACTTATGCTGTGCATTTGATCAGTCTGAGGAGATATCCGAAAG
GACCATTCCCTTTACCTTTGCTTGGAAATATTCTCTCATTAAGTGAAAGA
CCTTATTTGGATTTTATTGAGCTTGCTAAAGTGTATGGTGATGTTTTTAG
TATAAGTTTTGGTATGGAACGTGCGGTCATTCTAAATtcatatgacgtca
tcaaagagGCTTTAATGACCAGAGGTACTGACTTTGCGGGTAGACCCACA
ACCGACATACCAAACAAAATAATCAGTAGAAATTTCACAAATATCGCTCA
CCGGGATTATTCAAAAACATGGGCGTTTTTGAGAAAAGTTGCGTATAAAA
GTTTACATGTCTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATCACA
GAAGAAGTGGACATGATTGCATCGATTTTGTTAGCAATACCTGCTTTAGT
TTTGTTATGGATGTTCATCACTTATGCTGTGCATTTGATCAGTCTGAGGA
GATATCCGAAAGGACCATTCCCTTTACCTTTGCTTGGAAATATTCTCTCA
TTAAGTGAAAGACCTTATTTGGATTTTATTGAGCTTGCTAAAGTGTATGG
TGATGTTTTTAGTATAAGTTTTGGTATGGAACGTGCGGTCATTCTAAATt
catatgacgtcatcaaagagGCTTTAATGACCAGAGGTACTGACTTTGCG
GGTAGACCCACAACCGACATACCAAACAAAATAATCAGTAGAAATTTCAC
AAATATCGCTCACCGGGATTATTCAAAAACATGGGCGTTTTTGAGAAAAG
TTGCGTATAAAAGTTTACATGTCTATGGATCAGGAATGAAGAGGCTTGAA
GATTTGATCACAGAAGAAGTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026084XLOC_026084Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042222-proteinTCONS_00042222-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042222-exon-sc0003290-1491911889:8132..8422TCONS_00042222-exon-sc0003290-1491911889:8132..8422Clytia hemisphaericaexon
TCONS_00042222-exon-sc0003290-1510915933:8132..8422TCONS_00042222-exon-sc0003290-1510915933:8132..8422Clytia hemisphaericaexon
TCONS_00042222-exon-sc0003290-1575043694:8132..8422TCONS_00042222-exon-sc0003290-1575043694:8132..8422Clytia hemisphaericaexon
TCONS_00042222-exon-sc0003290-1491911889:8720..8971TCONS_00042222-exon-sc0003290-1491911889:8720..8971Clytia hemisphaericaexon
TCONS_00042222-exon-sc0003290-1510915933:8720..8971TCONS_00042222-exon-sc0003290-1510915933:8720..8971Clytia hemisphaericaexon
TCONS_00042222-exon-sc0003290-1575043694:8720..8971TCONS_00042222-exon-sc0003290-1575043694:8720..8971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003290supercontigsc0003290:8132..8971 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.6372	28.7955	19.1188	13.3678	17.0279	8.06636	8.42214	12.3364	7.91056	7.26581	1.76979	9.6066	5.89766	5.76489	2.57911	2.19075	11.283	16.2397	1.44674	1.90583	5.22261	6.21771	14.4848	17.4804	14.6521	11.1648	8.28742	3.8878	3.88264	5.5151
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002401Cyt_P450_E_grp-I
IPR001128Cyt_P450
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00042222 vs. Swiss-Prot (Human)
Match: CP2CJ (Cytochrome P450 2C19 OS=Homo sapiens GN=CYP2C19 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.831e-19
Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 3 
Query:  168 RYPKGPFPLPLLGNILSLSERPY-LDFIELAKVYGDVFSISFGMERAVILNSYDVIKEALMTRGTDFAGR---PTTDIPNKIISRNFTNIAHRDYSKTWAFLRKVAYKSLHVYGSGMKRLEDLITEEV 539
            + P GP PLP++GNIL +  +        L+K+YG VF++ FG+ER V+L+ Y+V+KEAL+  G +F+GR   P  +  N+     F+N       K W  +R+ +  +L  +G G + +ED + EE 
Sbjct:   28 KLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGRGHFPLAERANRGFGIVFSN------GKRWKEIRRFSLMTLRNFGMGKRSIEDRVQEEA 149
The following BLAST results are available for this feature:
BLAST of TCONS_00042222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP2CJ1.831e-1935.94Cytochrome P450 2C19 OS=Homo sapiens GN=CYP2C19 PE... [more]
back to top