TCONS_00042220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042220
Unique NameTCONS_00042220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042220 ID=TCONS_00042220|Name=TCONS_00042220|organism=Clytia hemisphaerica|type=transcript|length=624bp
ctTATATGACGGCACATGGAGATTAgttcagttcttttgtttataagttT
GTTTTTGGAAGTAATTATGTGGTACTTTTCGGTCATGCAAAGGTTGCACA
ATTTGCCCCCATTTGAATAGGGTTTTGTGTGATCGATGACTTTCCAGGAT
AACAGGGGTGAAATGTTTTTGCTCTGTAGTTTCCATAGTACTTTGAAAGT
TCAGTTGAATTCTCTTTTTCCTCATACCTAAAAGTATGCTTATGTTGGTT
CCATCTCGTTTTGAAGGTATTTTCTGTAAGGCCGATGTAGTTAACACCCT
CGTCGGCTGGGGAGGATTTTACCGTGCATTGGTATATTAAATGCATTAAA
TGTATATTTAAAAACTATGAATTTATAGTAATTacgaaaaacaaaatgtt
tgatACTTCaatagtgaaatattcaataaattcatagtttcaattttcag
tgggctcTTTTCTAGCGCTTCGCTTATCGCCTAATTTGTgtgtcacacaa
actttcttggCCGTTTGTAATAATTATGGATCAATGGTggcgtcacctaa
gcataaaaaagaaaggattttggcggcaatcaaaaatatgttccattcgg
gtcctaaaacatcttcaaatccag
Run BLAST on NCBI

transcript from alignment at sc0003288:3313..3936

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042220 ID=TCONS_00042220|Name=TCONS_00042220|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at sc0003288:3313..3936 (Clytia hemisphaerica)
ctggatttgaagatgttttaggacccgaatggaacatatttttgattgcc
gccaaaatcctttcttttttatgcttaggtgacgccACCATTGATCCATA
ATTATTACAAACGGccaagaaagtttgtgtgacacACAAATTAGGCGATA
AGCGAAGCGCTAGAAAAgagcccactgaaaattgaaactatgaatttatt
gaatatttcactattGAAGTatcaaacattttgtttttcgtAATTACTAT
AAATTCATAGTTTTTAAATATACATTTAATGCATTTAATATACCAATGCA
CGGTAAAATCCTCCCCAGCCGACGAGGGTGTTAACTACATCGGCCTTACA
GAAAATACCTTCAAAACGAGATGGAACCAACATAAGCATACTTTTAGGTA
TGAGGAAAAAGAGAATTCAACTGAACTTTCAAAGTACTATGGAAACTACA
GAGCAAAAACATTTCACCCCTGTTATCCTGGAAAGTCATCGATCACACAA
AACCCTATTCAAATGGGGGCAAATTGTGCAACCTTTGCATGACCGAAAAG
TACCACATAATTACTTCCAAAAACAaacttataaacaaaagaactgaacT
AATCTCCATGTGCCGTCATATAag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026082XLOC_026082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042220-exon-sc0003288-1491911889:3313..3936TCONS_00042220-exon-sc0003288-1491911889:3313..3936Clytia hemisphaericaexon
TCONS_00042220-exon-sc0003288-1510915933:3313..3936TCONS_00042220-exon-sc0003288-1510915933:3313..3936Clytia hemisphaericaexon
TCONS_00042220-exon-sc0003288-1575043694:3313..3936TCONS_00042220-exon-sc0003288-1575043694:3313..3936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003288supercontigsc0003288:3313..3936 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.81549	0.635789	1.1938	1.11667	0.121412	0.201119	0.367973	0.430576	0.0744938	0.28231	0.373552	0.0622158	0.702562	0.427538	0.106766	0.273084	0.257265	0.723561	0.409889	0.0950954	0.56174	0.284346	0	0.311686	0.550712	0.737245	0.562731	1.14717	0.384443	0.413755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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