TCONS_00042211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042211
Unique NameTCONS_00042211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042211 ID=TCONS_00042211|Name=TCONS_00042211|organism=Clytia hemisphaerica|type=transcript|length=402bp
TGGGAGGGCTCTTGTTTGTAAGTGATCAGTTTGTGCCGGTTGTATACAAC
ACTTGTCGGTTTGATATAAGCGGAATCGAGTAAGTGAATGGGGGTATTGT
AATCTGGTGCCTCACTCACAATGTCAAAGATATCAGCAGAAATGTTATTA
AACAATGCGAAGAGTTTCTTACGTTCAACGTTAGCTTGCTGTGCATCTGC
ATTTGGAGCATCTGCAGGTATGTCAGGAATAAAAGTGTGGAGATAGTTGG
CAAATGTCATCTTCCAATGCCTGtagagtttttcagcatttGGATCGTTT
GAGTCAGTTTCGAAGACTTTTGGCCGTAACAATCTATCCATGATGATGAC
CAGATGATGATGAGTTGGCAAACAAAATTGTTGTAGAATTGAAGAATAGC
AG
Run BLAST on NCBI

protein sequence of TCONS_00042211-protein

>TCONS_00042211-protein ID=TCONS_00042211-protein|Name=TCONS_00042211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
CYSSILQQFCLPTHHHLVIIMDRLLRPKVFETDSNDPNAEKLYRHWKMTF
ANYLHTFIPDIPADAPNADAQQANVERKKLFALFNNISADIFDIVSEAPD
YNTPIHLLDSAYIKPTSVVYNRHKLITYKQEPS
Run BLAST on NCBI

transcript from alignment at sc0003283:5320..5721

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042211 ID=TCONS_00042211|Name=TCONS_00042211|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0003283:5320..5721 (Clytia hemisphaerica)
CTGCTATTCTTCAATTCTACAACAATTTTGTTTGCCAACTCATCATCATC
TGGTCATCATCATGGATAGATTGTTACGGCCAAAAGTCTTCGAAACTGAC
TCAAACGATCCaaatgctgaaaaactctaCAGGCATTGGAAGATGACATT
TGCCAACTATCTCCACACTTTTATTCCTGACATACCTGCAGATGCTCCAA
ATGCAGATGCACAGCAAGCTAACGTTGAACGTAAGAAACTCTTCGCATTG
TTTAATAACATTTCTGCTGATATCTTTGACATTGTGAGTGAGGCACCAGA
TTACAATACCCCCATTCACTTACTCGATTCCGCTTATATCAAACCGACAA
GTGTTGTATACAACCGGCACAAACTGATCACTTACAAACAAGAGCCCTCC
CA

Coding sequence (CDS) from alignment at sc0003283:5320..5721

>TCONS_00042211 ID=TCONS_00042211|Name=TCONS_00042211|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0003283:5320..5721 (Clytia hemisphaerica)
TGCTATTCTTCAATTCTACAACAATTTTGTTTGCCAACTCATCATCATCT
GGTCATCATCATGGATAGATTGTTACGGCCAAAAGTCTTCGAAACTGACT
CAAACGATCCaaatgctgaaaaactctaCAGGCATTGGAAGATGACATTT
GCCAACTATCTCCACACTTTTATTCCTGACATACCTGCAGATGCTCCAAA
TGCAGATGCACAGCAAGCTAACGTTGAACGTAAGAAACTCTTCGCATTGT
TTAATAACATTTCTGCTGATATCTTTGACATTGTGAGTGAGGCACCAGAT
TACAATACCCCCATTCACTTACTCGATTCCGCTTATATCAAACCGACAAG
TGTTGTATACAACCGGCACAAACTGATCACTTACAAACAAGAGCCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026073XLOC_026073Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042211-proteinTCONS_00042211-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042211-exon-sc0003283-1491911889:5320..5721TCONS_00042211-exon-sc0003283-1491911889:5320..5721Clytia hemisphaericaexon
TCONS_00042211-exon-sc0003283-1510915933:5320..5721TCONS_00042211-exon-sc0003283-1510915933:5320..5721Clytia hemisphaericaexon
TCONS_00042211-exon-sc0003283-1575043694:5320..5721TCONS_00042211-exon-sc0003283-1575043694:5320..5721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003283supercontigsc0003283:5320..5721 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10294	0.537768	0.6244	1.83263	0	0.19589	0.472666	0	0	0	0	0	0	0	0	0.112016	0	0	0	0	0.17773	0.260071	0.210767	0	0.197362	0.176141	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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