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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042210 ID=TCONS_00042210|Name=TCONS_00042210|organism=Clytia hemisphaerica|type=transcript|length=1970bp
gaaacttttagaaaaaaagcttaactgaaactgaaaatattaagctttta
aggtatttttcttctatattttgcaaaaattgacagaatttgccgttttt
gctgattcagcgagaatttttatttataatgttaattttttgttataaac
tattatttcaagctgataggttttttgctgtttctcatatttagaatttt
cggttttatcaatgctgattttaaggtcccaaaatactggttgaccttta
agatgctatatcttttacccattcTCTAAATTCACAGATGTaactgcatt
ttctgaacggcattaggtgtagaaagtttcctataccccattttcataac
ttattttcaatatccaaggagctagagtgagttatatgcaatttttatct
aattttggtgttaaaatatttccttcagacgcaaatatgttattttgaat
ctgccCCAAACCATCCAAAACATTCTCATTTTTTAGtgtaaccatcattc
tttcaaaataaacacaaatcgtttaattctgataaatctacaagtcagaa
tcctcattttaatgacgacctccgttttgggggctgtctccgttttgggg
gccatatactgtataccAAATTCCATGACCATAGCTCTtatagatcaaaa
ataatcgacGGTGGTAGATTCTTCCCCCTCCCCTCCTCCCTGGagataca
aaaataaaaaacgctTGGGGTTAATAGAGTTAAGTTTGCTCCGCACctag
aaattttgtttgaaacacGTGGTCTTACATACATTGAATGTATGTATCGA
CTTTGTACAAAGGTACAAAAGACTGGTTttcaaaatacttcaaaagCTTA
GATAATGTTTTTACAAAGTCTATGTACTAGGGTTGTGTCACTGGTTAGGA
TATCTTTTCCGCCTTTTAGTGTCACATTCAGGGTCCTTTTTTAGCTAATC
TAGTCTCTCGCACAGGGTCAGAATTGAGACTGAAGTGTGGCGGACGTTAT
GCTTGAAAACTTCCCTAGTAGGATTCTTTTCTTAGGAATGACCAGTACCA
CGTACCCgctcttttttataaaagtatACTTTATAAGGATAGTATTACTT
CGTTTTAAAGAAGGGGTgcttattcgaagtaatacggtatatgaaattgg
ccaaaaaattaagaataccaccatcatgaAACTTGGTATCTGAACAATTT
TTAGAGCAGTTTACCTGTAAATTGTTTCTTCTTGATGATCCGCTGACGGC
AGTTTAATCTTTTAGCTAGTAGTATGGTTCACAGATCCTATAAAATAAGA
CTTCATTTGCATCCTATCTCCGTCAGCtcacttcaaaataattttaccgC
TACCCACCTAACATGTGTTTTTCTATCTCTTTCAGGTGAACACGACGGGT
CGATGTCATCAACCAATCGCAACTCCAACCTTTAGTTAATCCTAGATTTT
TCCCTGATGGCAGGTTTTTTTAACCCAGGGACTGATGATTTGGGATGTGT
TGTGCACCGCCGGTGGCTTCATCACTTAATTTACCCATTATAAACAAACC
TAATAACGTGGTCGGTCTCGGCCTCGGTCCACAGTGAAGcttttttgtaa
cttttcttTTATCATCGCCTCCTCGAGGGATGTTGGTTCACCTTCGGCAT
AAAATTATCCCATGTCTAATGACCTTAGGGCCTCCTTAATTTCCGAGTGC
CGTTGTCCTGACTGCTCAGCCCATACAGTGCACAGAATATTATGGTGCAC
TTCTTTGATTAGAATTAAGGTACACAGCACATCCCCAATGTTACCCCAAA
GCAATGCATCGATTTTTATGTTATTTCACTTTATGAATAAATTTCGGCTT
CATTCAATTATTTTGTCTCCATTTATTCTCAGATCCATGCTAGGCTAAAC
AGGTTCTTCATTTCGGACAACAGACTAAAGTGAATTTGAATTCGGCCTTA
TCATTTGATCCATAACTAGG Run BLAST on NCBI transcript from alignment at sc0003282:10217..12186 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042210 ID=TCONS_00042210|Name=TCONS_00042210|organism=Clytia hemisphaerica|type=transcript|length=1970bp|location=Sequence derived from alignment at sc0003282:10217..12186 (Clytia hemisphaerica)
CCTAGTTATGGATCAAATGATAAGGCCGAATTCAAATTCACTTTAGTCTG
TTGTCCGAAATGAAGAACCTGTTTAGCCTAGCATGGATCTGAGAATAAAT
GGAGACAAAATAATTGAATGAAGCCGAAATTTATTCATAAAGTGAAATAA
CATAAAAATCGATGCATTGCTTTGGGGTAACATTGGGGATGTGCTGTGTA
CCTTAATTCTAATCAAAGAAGTGCACCATAATATTCTGTGCACTGTATGG
GCTGAGCAGTCAGGACAACGGCACTCGGAAATTAAGGAGGCCCTAAGGTC
ATTAGACATGGGATAATTTTATGCCGAAGGTGAACCAACATCCCTCGAGG
AGGCGATGATAAaagaaaagttacaaaaaagCTTCACTGTGGACCGAGGC
CGAGACCGACCACGTTATTAGGTTTGTTTATAATGGGTAAATTAAGTGAT
GAAGCCACCGGCGGTGCACAACACATCCCAAATCATCAGTCCCTGGGTTA
AAAAAACCTGCCATCAGGGAAAAATCTAGGATTAACTAAAGGTTGGAGTT
GCGATTGGTTGATGACATCGACCCGTCGTGTTCACCTGAAAGAGATAGAA
AAACACATGTTAGGTGGGTAGcggtaaaattattttgaagtgaGCTGACG
GAGATAGGATGCAAATGAAGTCTTATTTTATAGGATCTGTGAACCATACT
ACTAGCTAAAAGATTAAACTGCCGTCAGCGGATCATCAAGAAGAAACAAT
TTACAGGTAAACTGCTCTAAAAATTGTTCAGATACCAAGTTtcatgatgg
tggtattcttaattttttggccaatttcatataccgtattacttcgaata
agcACCCCTTCTTTAAAACGAAGTAATACTATCCTTATAAAGTatacttt
tataaaaaagagcGGGTACGTGGTACTGGTCATTCCTAAGAAAAGAATCC
TACTAGGGAAGTTTTCAAGCATAACGTCCGCCACACTTCAGTCTCAATTC
TGACCCTGTGCGAGAGACTAGATTAGCTAAAAAAGGACCCTGAATGTGAC
ACTAAAAGGCGGAAAAGATATCCTAACCAGTGACACAACCCTAGTACATA
GACTTTGTAAAAACATTATCTAAGcttttgaagtattttgaaAACCAGTC
TTTTGTACCTTTGTACAAAGTCGATACATACATTCAATGTATGTAAGACC
ACgtgtttcaaacaaaatttctagGTGCGGAGCAAACTTAACTCTATTAA
CCCCAagcgttttttatttttgtatctCCAGGGAGGAGGGGAGGGGGAAG
AATCTACCACCgtcgattatttttgatctataAGAGCTATGGTCATGGAA
TTTggtatacagtatatggcccccaaaacggagacagcccccaaaacgga
ggtcgtcattaaaatgaggattctgacttgtagatttatcagaattaaac
gatttgtgtttattttgaaagaatgatggttacaCTAAAAAATGAGAATG
TTTTGGATGGTTTGGggcagattcaaaataacatatttgcgtctgaagga
aatattttaacaccaaaattagataaaaattgcatataactcactctagc
tccttggatattgaaaataagttatgaaaatggggtataggaaactttct
acacctaatgccgttcagaaaatgcagttACATCTGTGAATTTAGAgaat
gggtaaaagatatagcatcttaaaggtcaaccagtattttgggaccttaa
aatcagcattgataaaaccgaaaattctaaatatgagaaacagcaaaaaa
cctatcagcttgaaataatagtttataacaaaaaattaacattataaata
aaaattctcgctgaatcagcaaaaacggcaaattctgtcaatttttgcaa
aatatagaagaaaaataccttaaaagcttaatattttcagtttcagttaa
gctttttttctaaaagtttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042210-exon-sc0003282-1491911889:10217..12186 | TCONS_00042210-exon-sc0003282-1491911889:10217..12186 | Clytia hemisphaerica | exon |
| TCONS_00042210-exon-sc0003282-1510915933:10217..12186 | TCONS_00042210-exon-sc0003282-1510915933:10217..12186 | Clytia hemisphaerica | exon |
| TCONS_00042210-exon-sc0003282-1575043694:10217..12186 | TCONS_00042210-exon-sc0003282-1575043694:10217..12186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003282 | supercontig | sc0003282:10217..12186 . |
Blast
The following BLAST results are available for this feature:
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